Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6n17
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal pro...   320   5e-88
AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical ...    29   1.7  
U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical pr...    30   1.9  
AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical...    29   3.3  
AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical...    29   3.3  
AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta...    28   5.7  

>AC024780-6|AAF60569.1|  259|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 4 protein.
          Length = 259

 Score =  320 bits (787), Expect = 5e-88
 Identities = 149/223 (66%), Positives = 176/223 (78%)
 Frame = +1

Query: 22  RGPKKHLKRLNAPKAWMLDKLGGVYAPRPSTGPHKLRECLPLVIFLRNRLKYALTGNEVL 201
           RGPKKHLKRL AP  WMLDKLGGV+A RP+ GPHKLRE LPL +FLRNRLKYAL   E  
Sbjct: 2   RGPKKHLKRLAAPSHWMLDKLGGVFAVRPNPGPHKLRESLPLSLFLRNRLKYALNYTEAK 61

Query: 202 KIVKQRLIKVDGKVRTDPTYPAGFMDVVSIEKTNELFRLIYDVKGRFTIHRITPEEAKYK 381
           KI+ QR+++VDGKVRT   +P GFMDVV+IE+TNE FR++YD KGR+ +HRI   EA +K
Sbjct: 62  KILTQRVVRVDGKVRTCHKFPTGFMDVVAIERTNEYFRMLYDTKGRYVVHRIQAAEADFK 121

Query: 382 LCKVKRVATGPKNVPYLVTHDGRTIRYPDPLIKVNDSIQLDIATTKIMDFIKFESGNLCM 561
           LCKVK V T  K VP L T DGRTIRYPDP +KVND+I  +I+T KI D +KFE GNL  
Sbjct: 122 LCKVKSVRTVNKGVPVLTTTDGRTIRYPDPHVKVNDTIVFNISTQKITDSVKFEPGNLAY 181

Query: 562 ITGGRNLGRVGTIVSRERHPGSFDIVHIKDSTGHTFATRLNNV 690
           +TGGRN+GRVG I  RER PG+ DI+HIKDS GH+FATR++NV
Sbjct: 182 VTGGRNVGRVGIIGHRERLPGASDIIHIKDSAGHSFATRISNV 224


>AL132948-1|CAC51077.1|  735|Caenorhabditis elegans Hypothetical
           protein Y39B6A.1 protein.
          Length = 735

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 22/79 (27%), Positives = 29/79 (36%), Gaps = 1/79 (1%)
 Frame = +3

Query: 450 HHPLSRPTYQSQRFH-PVRHCNYEDYGLHQV*VGELVYDHGRP*LGACGHHRVPRETSRL 626
           HH  +   +  +  H P  H ++ ++G H    G     H  P      HH    E    
Sbjct: 462 HHAPAHHGHHGEHHHAPAHHGHHGEHGTHHGHHGS----HHSP-----AHHGHHGEHHHA 512

Query: 627 LRHCAHQGLHGTHLRHEVE 683
             H  H G HGTH  H  E
Sbjct: 513 PAHHGHHGEHGTHHGHHGE 531



 Score = 27.5 bits (58), Expect(2) = 1.7
 Identities = 14/34 (41%), Positives = 15/34 (44%)
 Frame = +3

Query: 564 HGRP*LGACGHHRVPRETSRLLRHCAHQGLHGTH 665
           HG    G+ G H     T   L H  H G HGTH
Sbjct: 643 HGDHHHGSHGVHHGHHGTHHSLAHHGHHGGHGTH 676



 Score = 21.0 bits (42), Expect(2) = 1.7
 Identities = 7/12 (58%), Positives = 7/12 (58%)
 Frame = +3

Query: 639 AHQGLHGTHLRH 674
           AH G HG H  H
Sbjct: 684 AHHGHHGAHHEH 695


>U97189-1|AAC48164.1|  623|Caenorhabditis elegans Hypothetical
           protein C48B6.4 protein.
          Length = 623

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
 Frame = +1

Query: 334 GRFTIHRITPEEAKYKLCKVKRVATGPKNVP-----YLVTHDGRTIR-YP 465
           G+  + R+T  E  Y+ CK+++ A   K VP     Y+V H  R I+ YP
Sbjct: 302 GQIIVRRLTDPEYPYRHCKIQKFAVRCKLVPENYGWYVVWHCQRDIQEYP 351


>AL110490-13|CAB54454.1|  377|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13b protein.
          Length = 377

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 552 LVYDHGRP*LGACGHHRVPRETSRLLRH 635
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 207 LVFDDGRKKVGSSEGMRRSRETSQLLKH 234


>AL110490-12|CAB54447.1|  326|Caenorhabditis elegans Hypothetical
           protein Y48B6A.13a protein.
          Length = 326

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 552 LVYDHGRP*LGACGHHRVPRETSRLLRH 635
           LV+D GR  +G+    R  RETS+LL+H
Sbjct: 156 LVFDDGRKKVGSSEGMRRSRETSQLLKH 183


>AC024792-1|AAK84610.1|  938|Caenorhabditis elegans Importin beta
            family protein 5 protein.
          Length = 938

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 16/55 (29%), Positives = 23/55 (41%)
 Frame = -3

Query: 491  ESLTLISGSG*RMVRPSCVTKYGTFLGPVATRLTLHNLYLASSGVIRWIVNLPLT 327
            E  ++ +  G   V P C   Y     PVA  +  H  Y A + ++R   N P T
Sbjct: 868  EQASMYNAEG-EFVNPFCRLSYAPKQPPVAANIANHKAYFAQAVLVRGPGNCPET 921


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,792,444
Number of Sequences: 27780
Number of extensions: 396661
Number of successful extensions: 1187
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1097
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1182
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)