Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6n14
         (243 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal prote...    90   2e-19
AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal pro...    90   2e-19
U55365-4|AAA98571.1|  492|Caenorhabditis elegans Cytochrome p450...    28   1.0  
AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinas...    28   1.0  
AC024765-8|AAF60530.1|  165|Caenorhabditis elegans Hypothetical ...    28   1.0  
Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical pr...    27   2.3  
Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical pr...    27   2.3  
Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical pr...    27   2.3  
Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical pr...    27   2.3  
Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical pr...    26   3.1  
U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domai...    26   4.1  
AF068709-4|AAC19253.2|  297|Caenorhabditis elegans Serpentine re...    25   7.1  
Z75527-8|CAA99778.2|  316|Caenorhabditis elegans Hypothetical pr...    25   9.4  
AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin relat...    25   9.4  

>U53148-4|AAB37070.1|   51|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 39 protein.
          Length = 51

 Score = 90.2 bits (214), Expect = 2e-19
 Identities = 41/51 (80%), Positives = 45/51 (88%)
 Frame = +2

Query: 32  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRDNAKRRHWRRTKLKL 184
           MSA K   IKRKLAKK KQNRP+PQWVRM+TGNT++ NAKRRHWRRTKLKL
Sbjct: 1   MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>AF303271-1|AAG50229.1|   51|Caenorhabditis elegans ribosomal
           protein L39 protein.
          Length = 51

 Score = 90.2 bits (214), Expect = 2e-19
 Identities = 41/51 (80%), Positives = 45/51 (88%)
 Frame = +2

Query: 32  MSAHKTFIIKRKLAKKLKQNRPIPQWVRMRTGNTIRDNAKRRHWRRTKLKL 184
           MSA K   IKRKLAKK KQNRP+PQWVRM+TGNT++ NAKRRHWRRTKLKL
Sbjct: 1   MSALKKSFIKRKLAKKQKQNRPMPQWVRMKTGNTMKYNAKRRHWRRTKLKL 51


>U55365-4|AAA98571.1|  492|Caenorhabditis elegans Cytochrome p450
           family protein 33A1 protein.
          Length = 492

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 19/59 (32%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -3

Query: 241 FFLTLQGFY*ITFNTFTSLQLELCPSPVTPLSVISNSVSC-AHPYPLRNGSVLFQLFGQ 68
           FFL L  F    FN F   +  L P P+ PL +I N +   ++P P        + FG+
Sbjct: 3   FFLLLTAFVLYLFNEFYWKRRGLPPGPI-PLPIIGNMIELFSYPPPTAAYDAWTKKFGK 60


>AF039037-4|AAC48229.3|  311|Caenorhabditis elegans Protein kinase
           protein 34 protein.
          Length = 311

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 20/49 (40%), Positives = 27/49 (55%), Gaps = 4/49 (8%)
 Frame = -3

Query: 181 LELCPSPVTPLSVISNSVSCAHPY----PLRNGSVLFQLFGQFALNNKR 47
           L++ P P++PLSV++N      PY    PL  GS     FGQ AL + R
Sbjct: 4   LQVVPPPISPLSVLANHPD--RPYEVLKPLGQGS-----FGQVALVSNR 45


>AC024765-8|AAF60530.1|  165|Caenorhabditis elegans Hypothetical
           protein Y39A3CR.8 protein.
          Length = 165

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 12/40 (30%), Positives = 24/40 (60%)
 Frame = +2

Query: 59  KRKLAKKLKQNRPIPQWVRMRTGNTIRDNAKRRHWRRTKL 178
           K+K+ K +++   +P   +  TGNT   N ++RH R+ ++
Sbjct: 68  KKKVVKSVEKTARMPD--KPETGNTATGNPEKRHKRKKRV 105


>Z95559-7|CAB76730.2|  329|Caenorhabditis elegans Hypothetical
           protein Y41E3.14 protein.
          Length = 329

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 11/33 (33%), Positives = 18/33 (54%)
 Frame = -3

Query: 211 ITFNTFTSLQLELCPSPVTPLSVISNSVSCAHP 113
           I F T T +   +C S ++ +  I  SV C++P
Sbjct: 72  IVFLTLTDMSATVCSSIISGVLYIKGSVFCSYP 104


>Z22179-9|CAD90178.1|  428|Caenorhabditis elegans Hypothetical
           protein F58A4.7c protein.
          Length = 428

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 199 TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 83
           T  SL+  +  P+P+ P+SV  +S S + P PL    ++F
Sbjct: 303 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 342


>Z22179-8|CAA80170.2|  431|Caenorhabditis elegans Hypothetical
           protein F58A4.7b protein.
          Length = 431

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 199 TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 83
           T  SL+  +  P+P+ P+SV  +S S + P PL    ++F
Sbjct: 305 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 344


>Z22179-7|CAA80167.2|  429|Caenorhabditis elegans Hypothetical
           protein F58A4.7a protein.
          Length = 429

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/40 (35%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
 Frame = -3

Query: 199 TFTSLQLELC-PSPVTPLSVISNSVSCAHPYPLRNGSVLF 83
           T  SL+  +  P+P+ P+SV  +S S + P PL    ++F
Sbjct: 303 TLPSLETTVIRPTPLPPISVEISSPSLSTPSPLTAAPIIF 342


>Z74472-5|CAA98943.1|  802|Caenorhabditis elegans Hypothetical
           protein F23H12.5 protein.
          Length = 802

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 14/53 (26%), Positives = 27/53 (50%)
 Frame = -3

Query: 166 SPVTPLSVISNSVSCAHPYPLRNGSVLFQLFGQFALNNKRLMGRHFEQSSCQN 8
           S   PLSVIS+S S   P+   + +++ ++     +   + +G + E  SC +
Sbjct: 19  SQYEPLSVISSSWSMWSPWSFCSNNLMIRVRACSTVRGYKCLGHNKEFQSCNS 71


>U43375-1|AAA83618.1|  709|Caenorhabditis elegans Sulfatase domain
           protein protein 1 protein.
          Length = 709

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 15/43 (34%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = +2

Query: 47  TFIIKRKLAKKLKQ--NRPIPQWVRMRTGNTIRDNAKRRHWRR 169
           T +I+R    KLK+  +R I Q  +    N +    KRR W+R
Sbjct: 400 TILIERGKMPKLKKIRDRYIKQKKKFNKENRLSKECKRRKWQR 442


>AF068709-4|AAC19253.2|  297|Caenorhabditis elegans Serpentine
           receptor, class t protein26 protein.
          Length = 297

 Score = 25.0 bits (52), Expect = 7.1
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -1

Query: 102 GMGLFCFSFLANLRLIIN 49
           G+GL+C S L N+ L++N
Sbjct: 95  GLGLWCCSCLLNILLLVN 112


>Z75527-8|CAA99778.2|  316|Caenorhabditis elegans Hypothetical
           protein C15C8.6 protein.
          Length = 316

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 8/27 (29%), Positives = 18/27 (66%)
 Frame = -1

Query: 138 RIVFPVRILTH*GMGLFCFSFLANLRL 58
           +++FP +++    +G+FCFSF   + +
Sbjct: 127 KLIFPDKVIYVIIIGVFCFSFFFTVNI 153


>AF039041-1|AAP46271.1| 1067|Caenorhabditis elegans Laminin related.
            see also lmb-protein 1 protein.
          Length = 1067

 Score = 24.6 bits (51), Expect = 9.4
 Identities = 9/28 (32%), Positives = 13/28 (46%)
 Frame = +2

Query: 140 DNAKRRHWRRTKLKL*ACECVKCNLIKT 223
           D  K  +W  T+  +  C    CNL+ T
Sbjct: 465 DRCKNGYWNLTETNVDGCVACTCNLLGT 492


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,247,751
Number of Sequences: 27780
Number of extensions: 91872
Number of successful extensions: 252
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 246
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 252
length of database: 12,740,198
effective HSP length: 60
effective length of database: 11,073,398
effective search space used: 221467960
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)