Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6n13
         (384 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   0.76 
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    27   1.0  
SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein L32|Sch...    25   3.1  
SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces ...    25   4.1  
SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor 2|Schizosac...    24   7.1  
SPAC1486.09 |||ribosome biogenesis protein Nob1 |Schizosaccharom...    24   7.1  
SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual          24   9.4  
SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3 |Schi...    24   9.4  

>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 0.76
 Identities = 15/32 (46%), Positives = 17/32 (53%), Gaps = 3/32 (9%)
 Frame = +1

Query: 295 PDNNKTDA---AVNTSSPKRAVQTENDDDDDE 381
           P NN  DA   A+N    K A   E D+DDDE
Sbjct: 541 PSNNLMDALASALNQRKTKVAQSDEEDEDDDE 572


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 27.1 bits (57), Expect = 1.0
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +1

Query: 274 FQTKIYRPDNNKTDAAVNTSSPKRAVQTENDDDDDE 381
           FQ K+YR          +T + K   Q  N+DD DE
Sbjct: 111 FQNKLYRTLPQDKRTTTSTPNVKPVFQHSNNDDGDE 146


>SPAC3H5.10 |rpl3202|rpl32-2, rpl32|60S ribosomal protein
           L32|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 127

 Score = 25.4 bits (53), Expect = 3.1
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +1

Query: 70  YLKKRGVGAHIIKVASSPQLRLLYKNAYSAVSCGNYS 180
           Y    G+ A +++  S  +L L++   Y+A   GN S
Sbjct: 62  YCMPNGLKAFLVRNVSDVELLLMHNKTYAAEIAGNVS 98


>SPCC285.14 |||TRAPP complex subunit Trs130 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1150

 Score = 25.0 bits (52), Expect = 4.1
 Identities = 12/54 (22%), Positives = 30/54 (55%)
 Frame = +1

Query: 97  HIIKVASSPQLRLLYKNAYSAVSCGNYSILCNLVQNGEYDLNAIMFNCAEIKLN 258
           +++  + +P + LL+   +++++ G  ++ CN +  G Y L  I+F   +  L+
Sbjct: 613 YVLSSSKNP-MNLLF-TLHNSITDGKLNVHCNDIIPGRYHLKTIVFKLKDSVLS 664


>SPCC16C4.01 |sif2|SPCC5E4.09|Sad1 interacting factor
           2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 446

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 10/39 (25%), Positives = 18/39 (46%)
 Frame = -1

Query: 135 QSKLRRASHLDNMGANAPFF*VIFVFNYKI*XVFXFTVD 19
           Q  L+       +  N P F  +F F Y +  ++ +T+D
Sbjct: 136 QESLQSIFEESGLDRNQPLFREVFCFTYGVVVLWGYTID 174


>SPAC1486.09 |||ribosome biogenesis protein Nob1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 388

 Score = 24.2 bits (50), Expect = 7.1
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +1

Query: 301 NNKTDAAVNTSSPKRAVQTENDDDDD 378
           NNK +A  NT   K     E DD+DD
Sbjct: 165 NNK-EAHPNTEENKEQEDNEEDDEDD 189


>SPCC613.07 |||zf-HIT|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 304 NKTDAAVNTSSPKRAVQTENDDDDD 378
           N     V+TSS   +V+ +N+DD+D
Sbjct: 293 NSPTQNVDTSSKLSSVKFQNEDDED 317


>SPBC26H8.10 |dis3|rrp44|3'-5' exoribonuclease subunit Dis3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 970

 Score = 23.8 bits (49), Expect = 9.4
 Identities = 8/21 (38%), Positives = 15/21 (71%)
 Frame = +1

Query: 313 DAAVNTSSPKRAVQTENDDDD 375
           + A+N +SP+  +QT+N+  D
Sbjct: 656 EGALNLASPEVRIQTDNETSD 676


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.314    0.132    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,384,353
Number of Sequences: 5004
Number of extensions: 24177
Number of successful extensions: 56
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 126307516
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)