Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6n13
(384 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0205 + 1475628-1475969,1477446-1477642,1478476-1478611,147... 31 0.41
11_01_0417 - 3214320-3214435,3214606-3214702,3214766-3214768,321... 29 1.7
01_05_0420 + 21969797-21970939,21971307-21971369,21971488-219716... 29 1.7
06_01_1138 - 9429447-9433868 28 2.2
12_01_0464 + 3635551-3635836,3635984-3636246 28 2.9
01_01_0628 - 4731052-4731601,4731825-4732782,4733143-4733953,473... 28 2.9
11_06_0065 - 19736265-19737302 27 3.8
11_01_0259 + 1981554-1982249 27 5.1
02_01_0566 - 4144104-4144230,4144492-4144649,4145770-4146885 27 5.1
03_05_0936 - 28955486-28955683,28956320-28956424,28956550-289566... 27 6.7
>05_01_0205 +
1475628-1475969,1477446-1477642,1478476-1478611,
1478706-1479178,1479287-1479404,1479762-1479911,
1480039-1480125,1480536-1480829
Length = 598
Score = 30.7 bits (66), Expect = 0.41
Identities = 14/29 (48%), Positives = 17/29 (58%)
Frame = +1
Query: 295 PDNNKTDAAVNTSSPKRAVQTENDDDDDE 381
PD K V+T PK +QT+ND D DE
Sbjct: 249 PDELKGKIIVSTKPPKEYLQTKNDADADE 277
>11_01_0417 -
3214320-3214435,3214606-3214702,3214766-3214768,
3215054-3215196,3215309-3215348,3215713-3215765,
3215889-3215962,3216081-3216163,3216287-3216355,
3216456-3216800
Length = 340
Score = 28.7 bits (61), Expect = 1.7
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = +1
Query: 316 AAVNTSSPKRAVQTENDDDDDE 381
AA T SP+ A E +DDDDE
Sbjct: 70 AAATTPSPRGAAVAEGEDDDDE 91
>01_05_0420 +
21969797-21970939,21971307-21971369,21971488-21971616,
21972241-21972291,21972669-21972809,21972922-21973122,
21973201-21973419,21973582-21973700,21973772-21973862,
21975864-21975965,21976291-21976315,21976522-21976592
Length = 784
Score = 28.7 bits (61), Expect = 1.7
Identities = 18/68 (26%), Positives = 34/68 (50%)
Frame = +1
Query: 103 IKVASSPQLRLLYKNAYSAVSCGNYSILCNLVQNGEYDLNAIMFNCAEIKLNKGQMLFQT 282
I V S +L+LL ++ + Y C +++ G Y +NA++FN + +K Q L
Sbjct: 676 IAVTPSCKLQLLMWTYFAELGANIY---CQILKIGNYQMNALLFN-PQAYNSKSQFLIFI 731
Query: 283 KIYRPDNN 306
+ + + N
Sbjct: 732 SLQQQEAN 739
>06_01_1138 - 9429447-9433868
Length = 1473
Score = 28.3 bits (60), Expect = 2.2
Identities = 11/22 (50%), Positives = 16/22 (72%)
Frame = +1
Query: 316 AAVNTSSPKRAVQTENDDDDDE 381
AA ++S P +A TE +DDDD+
Sbjct: 151 AAPSSSPPDQAADTEEEDDDDD 172
>12_01_0464 + 3635551-3635836,3635984-3636246
Length = 182
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/17 (64%), Positives = 14/17 (82%)
Frame = +1
Query: 331 SSPKRAVQTENDDDDDE 381
S+ +RA+ ENDDDDDE
Sbjct: 48 SARRRAMAMENDDDDDE 64
>01_01_0628 -
4731052-4731601,4731825-4732782,4733143-4733953,
4734038-4734241,4734695-4734802,4735930-4736369,
4736463-4736541
Length = 1049
Score = 27.9 bits (59), Expect = 2.9
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 157 AVSCGNYSILCNLVQNGEYDLNAIMFNCAEIKL 255
+ SC Y + L+++GE ++ ++F A IKL
Sbjct: 533 SASCNLYDSIKELIESGEIEMKLLLFPSAIIKL 565
>11_06_0065 - 19736265-19737302
Length = 345
Score = 27.5 bits (58), Expect = 3.8
Identities = 10/26 (38%), Positives = 16/26 (61%)
Frame = +1
Query: 304 NKTDAAVNTSSPKRAVQTENDDDDDE 381
+KTD +N ++ A +DDDDD+
Sbjct: 241 SKTDDLINATADAAAAAASDDDDDDD 266
>11_01_0259 + 1981554-1982249
Length = 231
Score = 27.1 bits (57), Expect = 5.1
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = +1
Query: 328 TSSPKRAVQTENDDDDDE 381
T + VQ ENDDDDD+
Sbjct: 194 TEEDEEVVQAENDDDDDD 211
>02_01_0566 - 4144104-4144230,4144492-4144649,4145770-4146885
Length = 466
Score = 27.1 bits (57), Expect = 5.1
Identities = 11/24 (45%), Positives = 16/24 (66%)
Frame = +1
Query: 310 TDAAVNTSSPKRAVQTENDDDDDE 381
+ +AVN +P+R T DD+DDE
Sbjct: 163 SSSAVNAIAPERPDTTSADDEDDE 186
>03_05_0936 -
28955486-28955683,28956320-28956424,28956550-28956693,
28957078-28957356,28957480-28957587,28958288-28958567,
28958724-28960029,28961301-28962342
Length = 1153
Score = 26.6 bits (56), Expect = 6.7
Identities = 14/31 (45%), Positives = 17/31 (54%)
Frame = +1
Query: 289 YRPDNNKTDAAVNTSSPKRAVQTENDDDDDE 381
Y DN K A +TS P R + DDDDD+
Sbjct: 421 YPSDNEK--ATGHTSGPDRHDRPTKDDDDDQ 449
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.314 0.132 0.371
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,746,802
Number of Sequences: 37544
Number of extensions: 151253
Number of successful extensions: 463
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 441
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 459
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 636799876
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 42 (22.0 bits)
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