Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6n13
         (384 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.         23   1.2  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   1.2  
AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly pro...    23   1.2  
AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly pro...    23   1.2  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.5  

>D79207-1|BAA23639.1|  432|Apis mellifera milk protein protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +1

Query: 181 ILCNLVQ---NGEYDLNAIMFNCAEIKLNKGQMLFQTKIYRPDNNKT 312
           +L N +Q   N +++ + + F      +N  +++  T+   PDN++T
Sbjct: 380 VLSNKMQKMVNNDFNFDDVNFRIMNANVN--ELILNTRCENPDNDRT 424


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
            protein.
          Length = 1370

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +1

Query: 115  SSPQLRLLYKNAYSAVSCGNYSI 183
            SSP   L+ ++A  A SCG  S+
Sbjct: 1257 SSPATALMLQHAPPAYSCGTVSV 1279


>AF388203-1|AAM73637.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +1

Query: 181 ILCNLVQ---NGEYDLNAIMFNCAEIKLNKGQMLFQTKIYRPDNNKT 312
           +L N +Q   N +++ + + F      +N  +++  T+   PDN++T
Sbjct: 380 VLSNKMQKMVNNDFNFDDVNFRIMNANVN--ELILNTRCENPDNDRT 424


>AF000633-1|AAC61895.1|  432|Apis mellifera major royal jelly
           protein MRJP1 protein.
          Length = 432

 Score = 23.0 bits (47), Expect = 1.2
 Identities = 11/47 (23%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = +1

Query: 181 ILCNLVQ---NGEYDLNAIMFNCAEIKLNKGQMLFQTKIYRPDNNKT 312
           +L N +Q   N +++ + + F      +N  +++  T+   PDN++T
Sbjct: 380 VLSNKMQKMVNNDFNFDDVNFRIMNANVN--ELILNTRCENPDNDRT 424


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 20.6 bits (41), Expect = 6.5
 Identities = 9/33 (27%), Positives = 15/33 (45%)
 Frame = -1

Query: 180 TIVAARHCRIGVFVQQSKLRRASHLDNMGANAP 82
           +++ ARH    V   ++    ASH   +  N P
Sbjct: 646 SVITARHAGEYVCTAENAAGTASHSTTLTVNVP 678


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.314    0.132    0.371 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 95,868
Number of Sequences: 438
Number of extensions: 1931
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  9424380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.1 bits)