Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6n09
(700 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 31 0.12
SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr 1... 31 0.16
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 31 0.21
SPBC1289.12 |usp109||U1 snRNP-associated protein Usp109|Schizosa... 30 0.28
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 30 0.37
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 29 0.64
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 28 1.1
SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|c... 28 1.1
SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr 2|||... 28 1.5
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 27 2.0
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 2.6
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 27 2.6
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 2.6
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual 27 2.6
SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomy... 27 3.4
SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces p... 26 4.5
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 4.5
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce... 26 4.5
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 6.0
SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual 26 6.0
SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr... 26 6.0
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 7.9
SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity ... 25 7.9
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 7.9
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 25 7.9
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 31.5 bits (68), Expect = 0.12
Identities = 22/67 (32%), Positives = 32/67 (47%)
Frame = +3
Query: 27 AISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLTPSSLG 206
A+ AT T S+NP T I N + K F+ PP++++ P +L P+S
Sbjct: 683 ALPATVTTSANPLGFKSTIQRPIPIKNNEDSDSCKAFSQA--PPIATKKPPTFLKPNSPE 740
Query: 207 MAKGVSP 227
AK V P
Sbjct: 741 YAKTVIP 747
>SPAPJ760.02c |app1||App1 protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 857
Score = 31.1 bits (67), Expect = 0.16
Identities = 19/50 (38%), Positives = 25/50 (50%), Gaps = 4/50 (8%)
Frame = +3
Query: 18 PSPAISATSTRSSN---PRFHTPTTPDLTSIS-INPLTPYQKEFAPGLKP 155
P P+IS T+T SS H PTTPD ++ + L P +P KP
Sbjct: 273 PKPSISTTTTGSSYRSAESSHAPTTPDHFKLTPLTKLEPQPPSGSPSKKP 322
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 30.7 bits (66), Expect = 0.21
Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 4/89 (4%)
Frame = +3
Query: 9 IKPPSPAISATSTRSSNPRF--HTPTTP-DLTSISINPLTPYQKEFAPGLKPPLSSEAPS 179
+ P SP ++A S SS+P P TP + S ++NP Y+ + PP A
Sbjct: 960 VAPQSP-VAAASRISSSPNMPPSNPYTPIAVASSTVNPAHTYKPHGGSQIVPPPKQPANR 1018
Query: 180 AY-LTPSSLGMAKGVSPPYFQVNDESQAS 263
L P++ A PP V S S
Sbjct: 1019 VVPLPPTASQRASAYEPPTVSVPSPSALS 1047
>SPBC1289.12 |usp109||U1 snRNP-associated protein
Usp109|Schizosaccharomyces pombe|chr 2|||Manual
Length = 352
Score = 30.3 bits (65), Expect = 0.28
Identities = 20/77 (25%), Positives = 30/77 (38%)
Frame = +3
Query: 12 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLT 191
+PPS A+ + + P P P + + NP TP+ P + A + L
Sbjct: 245 RPPSMALLPSKQSTYWPALAAPVYPSMKDVPNNPFTPF-SPINPYYAKSWNHTASAPLLP 303
Query: 192 PSSLGMAKGVSPPYFQV 242
P G+ G PY V
Sbjct: 304 P---GLKNGSDYPYLSV 317
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 29.9 bits (64), Expect = 0.37
Identities = 20/54 (37%), Positives = 27/54 (50%)
Frame = +3
Query: 15 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAP 176
PP PA ++++ SS+P T +T TS SI P P + PP SS P
Sbjct: 370 PPPPASTSSTGTSSSPLLST-STSCTTSTSIPPTGNSTTPVTPTV-PPTSSSTP 421
Score = 29.5 bits (63), Expect = 0.48
Identities = 24/86 (27%), Positives = 36/86 (41%)
Frame = +3
Query: 15 PPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLTP 194
PP PA ++++ SS+P + +T TS SI P P + PP S+ + S P
Sbjct: 316 PPPPASTSSTGTSSSP-LPSTSTSCTTSTSIPPTGNSTTPVTPTV-PPTSTSSTSTPPPP 373
Query: 195 SSLGMAKGVSPPYFQVNDESQASRLI 272
+S S P + S I
Sbjct: 374 ASTSSTGTSSSPLLSTSTSCTTSTSI 399
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 29.1 bits (62), Expect = 0.64
Identities = 23/62 (37%), Positives = 31/62 (50%), Gaps = 6/62 (9%)
Frame = +3
Query: 21 SPAISATSTRSS-NPRFHTPTTPDLTSISINPLTP-----YQKEFAPGLKPPLSSEAPSA 182
SP +SA S +P P+TP + SI+P TP Y + A L PLS + +A
Sbjct: 284 SPELSADKVLSHCSPIDARPSTPSCPNASISPKTPNTGDHYGFDGAEYLGTPLSVGSTTA 343
Query: 183 YL 188
YL
Sbjct: 344 YL 345
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 28.3 bits (60), Expect = 1.1
Identities = 14/43 (32%), Positives = 23/43 (53%)
Frame = -2
Query: 621 RNMARIYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVVVQYG 493
R +A Y+ + LGG++ S+ EK F + N DV+ + G
Sbjct: 112 RALADKYKHVLVLGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPAC31A2.12 |||arrestin/PY protein 1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 596
Score = 28.3 bits (60), Expect = 1.1
Identities = 19/63 (30%), Positives = 29/63 (46%)
Frame = +3
Query: 12 KPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLT 191
+PPSP I R+S F +PT S+ + + G+ P SS A A+L+
Sbjct: 494 RPPSPGIVTPPQRTSPSFFVSPTESTRQSLDSRRSFEHSTSSSSGISPSHSS-ASLAHLS 552
Query: 192 PSS 200
+S
Sbjct: 553 QAS 555
>SPBPJ4664.02 |||glycoprotein |Schizosaccharomyces pombe|chr
2|||Manual
Length = 3971
Score = 27.9 bits (59), Expect = 1.5
Identities = 19/78 (24%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
Frame = +3
Query: 9 IKPPSPAISATSTRSSNPRFHTP----TTPDLTSISINPLTPYQKEFAPGLKPPLSSEAP 176
+ +P S+T+ +S P + +TP +S ++N TP P++S
Sbjct: 1578 VNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTALNTSTPITSSSVLNSSTPITSSTV 1637
Query: 177 SAYLTPSSLGMAKGVSPP 230
TP + A SPP
Sbjct: 1638 LNSSTPITSSTALNTSPP 1655
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/64 (26%), Positives = 25/64 (39%)
Frame = +3
Query: 39 TSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLTPSSLGMAKG 218
TST ++ +TP +S +N TP A PP++S TP +
Sbjct: 1616 TSTPITSSSVLNSSTPITSSTVLNSSTPITSSTALNTSPPITSSTVVNSSTPITSSTVVN 1675
Query: 219 VSPP 230
S P
Sbjct: 1676 TSTP 1679
Score = 26.6 bits (56), Expect = 3.4
Identities = 18/70 (25%), Positives = 28/70 (40%)
Frame = +3
Query: 21 SPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLTPSS 200
S + TST ++ +TP +S +N TP A P++S + TP +
Sbjct: 1718 SSTVVNTSTPITSSTVVNSSTPITSSTVVNSSTPITSSTALNTSTPITSSSVLNSSTPIT 1777
Query: 201 LGMAKGVSPP 230
A S P
Sbjct: 1778 SSTALNTSTP 1787
Score = 25.4 bits (53), Expect = 7.9
Identities = 17/70 (24%), Positives = 28/70 (40%)
Frame = +3
Query: 21 SPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLTPSS 200
S + TST ++ +TP +S ++N TP P++S + TP +
Sbjct: 3014 SSTVVNTSTPITSSTVVNSSTPITSSTALNTSTPITSSTVLNSSTPITSSSVLNSSTPIT 3073
Query: 201 LGMAKGVSPP 230
A S P
Sbjct: 3074 SSTALNTSTP 3083
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 27.5 bits (58), Expect = 2.0
Identities = 25/69 (36%), Positives = 29/69 (42%)
Frame = +3
Query: 24 PAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLTPSSL 203
P I S+ SS P P P + PL P Q AP PP S APS P L
Sbjct: 325 PPIGNGSSNSSLPP--PPPPPRSNAAGSIPLPP-QGRSAPPPPPPRS--APSTGRQPPPL 379
Query: 204 GMAKGVSPP 230
++ VS P
Sbjct: 380 SSSRAVSNP 388
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 2.6
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 466 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 561
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 27.1 bits (57), Expect = 2.6
Identities = 25/82 (30%), Positives = 36/82 (43%), Gaps = 1/82 (1%)
Frame = +3
Query: 18 PSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQ-KEFAPGLKPPLSSEAPSAYLTP 194
P ++S+ FHTPT P T +S +P + + PLS +A S LT
Sbjct: 123 PPNSLSSQPKHQEFHLFHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS--LTS 180
Query: 195 SSLGMAKGVSPPYFQVNDESQA 260
S L + SPP V +S +
Sbjct: 181 SPLKDFQS-SPPLSTVLQKSHS 201
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.1 bits (57), Expect = 2.6
Identities = 20/78 (25%), Positives = 34/78 (43%)
Frame = +1
Query: 367 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 546
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 547 LSASIQASLPSSEIYRQL 600
+ + SSEI++ L
Sbjct: 665 VDFVDYWTKSSSEIFKML 682
>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
Length = 1236
Score = 27.1 bits (57), Expect = 2.6
Identities = 13/28 (46%), Positives = 14/28 (50%)
Frame = +3
Query: 21 SPAISATSTRSSNPRFHTPTTPDLTSIS 104
S IS +ST N FH PT TS S
Sbjct: 801 SRTISTSSTNEYNTSFHAPTVSSTTSSS 828
>SPCC364.02c |bis1||stress response protein Bis1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 384
Score = 26.6 bits (56), Expect = 3.4
Identities = 17/60 (28%), Positives = 29/60 (48%), Gaps = 2/60 (3%)
Frame = +3
Query: 9 IKPPSPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPG--LKPPLSSEAPSA 182
I+ S + TS S++ ++ +TP+ S + LTP + L+ PL +PSA
Sbjct: 294 IRSHSTNTTITSVDSASTALNSYSTPNSVSRKLTNLTPAARRLVARSYLRSPLHGSSPSA 353
>SPAC13F5.04c |||endosomal sorting protein |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 277
Score = 26.2 bits (55), Expect = 4.5
Identities = 16/58 (27%), Positives = 27/58 (46%)
Frame = +3
Query: 27 AISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLTPSS 200
A+ ++ S F PTT S+SI+P K A +P + ++ S TP++
Sbjct: 69 AVETNASASHETSFALPTTSPAASLSISP----TKSAAVSSEPNVEADVKSLSSTPAA 122
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +1
Query: 256 KLRALLVVIPRILRSPPPTHPLIEDV 333
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 170
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/25 (52%), Positives = 16/25 (64%)
Frame = +1
Query: 568 SLPSSEIYRQLVDSRHVSSDSFGVY 642
+L S I+R + S HVSS S GVY
Sbjct: 2 TLLDSSIFRFRLSSLHVSSRSLGVY 26
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 6.0
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 632 KESEETWRESTNWR*ISEEG 573
KE E W + NW+ SEEG
Sbjct: 809 KEELEAWTRAFNWQKASEEG 828
>SPAC11D3.04c |||SnoaL|Schizosaccharomyces pombe|chr 1|||Manual
Length = 130
Score = 25.8 bits (54), Expect = 6.0
Identities = 13/33 (39%), Positives = 18/33 (54%)
Frame = +1
Query: 589 YRQLVDSRHVSSDSFGVYVKS*SLILHSFGLLV 687
YRQLVD R ++ D F + K+ LH + V
Sbjct: 34 YRQLVDGRELTLDDFISHAKALRTHLHRLDINV 66
>SPBPB7E8.02 |||PSP1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 749
Score = 25.8 bits (54), Expect = 6.0
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 102 SINPLTPYQKEFAPGLKPPLSSEAPSAYLTPSS 200
S+NP TP +P + PP+S+ +P P S
Sbjct: 271 SLNPSTPSPFGGSPVMHPPVSNLSPRTPAVPMS 303
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 7.9
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +1
Query: 391 LVTHKELALKVSSIIGTRVYVFDPSCY 471
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPAC732.02c |||fructose-2,6-bisphosphate 2-phosphatase activity
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 408
Score = 25.4 bits (53), Expect = 7.9
Identities = 10/28 (35%), Positives = 15/28 (53%)
Frame = +2
Query: 2 LMHQATLPCDLGYINPIIKSPIPYTNHP 85
+ HQA L C GY + + +P+ N P
Sbjct: 348 ICHQAILRCIYGYYHNLSLEELPFINVP 375
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.4 bits (53), Expect = 7.9
Identities = 15/34 (44%), Positives = 20/34 (58%)
Frame = -2
Query: 606 IYQLAVDLGGRERSLNRCREKSSFVVLKNRPDVV 505
++Q A+ LG RS RC KSSF+ + DVV
Sbjct: 33 LHQQAL-LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.4 bits (53), Expect = 7.9
Identities = 20/68 (29%), Positives = 30/68 (44%)
Frame = +3
Query: 21 SPAISATSTRSSNPRFHTPTTPDLTSISINPLTPYQKEFAPGLKPPLSSEAPSAYLTPSS 200
+P I A S + +F + S++ +PL +P L P SS +PS L S
Sbjct: 299 TPGIDAPSDLEA--KFSDLGVSSVVSVT-SPLQSCTNSPSPPLSSPASSASPSESLRNES 355
Query: 201 LGMAKGVS 224
LG+ S
Sbjct: 356 LGIKSAKS 363
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,835,002
Number of Sequences: 5004
Number of extensions: 57589
Number of successful extensions: 310
Number of sequences better than 10.0: 25
Number of HSP's better than 10.0 without gapping: 211
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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