Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6n07
         (531 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing...    34   2.4  
UniRef50_Q8DM37 Cluster: Tll0286 protein; n=1; Synechococcus elo...    33   4.1  
UniRef50_A4TWK0 Cluster: Glutamine synthetase adenylyltransferas...    33   4.1  
UniRef50_UPI0000499027 Cluster: hypothetical protein 189.t00012;...    33   5.4  
UniRef50_Q5D5G3 Cluster: Phage tail sheath protein; n=1; Wolbach...    33   5.4  
UniRef50_A3Q486 Cluster: Transcriptional regulator, TetR family;...    32   7.2  
UniRef50_A4R449 Cluster: Putative uncharacterized protein; n=1; ...    32   7.2  

>UniRef50_UPI00003654E6 Cluster: Ankyrin repeat domain-containing
           protein 13B.; n=1; Takifugu rubripes|Rep: Ankyrin repeat
           domain-containing protein 13B. - Takifugu rubripes
          Length = 634

 Score = 33.9 bits (74), Expect = 2.4
 Identities = 17/38 (44%), Positives = 22/38 (57%)
 Frame = +3

Query: 279 PSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASL 392
           PSC F  PP  TVL    R  L++++  LL  +IQ SL
Sbjct: 506 PSCVFEVPPGYTVLGSKQRDTLREDEEDLLQFAIQQSL 543


>UniRef50_Q8DM37 Cluster: Tll0286 protein; n=1; Synechococcus
           elongatus|Rep: Tll0286 protein - Synechococcus elongatus
           (Thermosynechococcus elongatus)
          Length = 158

 Score = 33.1 bits (72), Expect = 4.1
 Identities = 20/75 (26%), Positives = 33/75 (44%)
 Frame = +3

Query: 78  LRALLVVIPRILRSPPPTHPLIEDVVMATNQAIIDYKVKIADNNLVTHKELALKVSSIIG 257
           L  LL+VIP  L   P +H +I  +  A NQ ++  +  + DN   T + +       + 
Sbjct: 8   LLLLLLVIPLWLAVSPRSHAMIRTIEEAPNQVVVQSRHPLRDNRGFTWQVILFSRPDQLQ 67

Query: 258 TRVYVFDPSCYFSTP 302
            R+  F    +F  P
Sbjct: 68  LRLVGFPEQYHFRHP 82


>UniRef50_A4TWK0 Cluster: Glutamine synthetase adenylyltransferase;
           n=3; Magnetospirillum|Rep: Glutamine synthetase
           adenylyltransferase - Magnetospirillum gryphiswaldense
          Length = 1137

 Score = 33.1 bits (72), Expect = 4.1
 Identities = 18/50 (36%), Positives = 25/50 (50%)
 Frame = +3

Query: 24  AWLKGFRPLIFK*MMNHKLRALLVVIPRILRSPPPTHPLIEDVVMATNQA 173
           A L G  P + + +  H  +   VV P     PPPT  LIED+  A ++A
Sbjct: 728 AELMGNAPKLAEHLARHTTQLDAVVAPSFFEPPPPTERLIEDLNKALSEA 777


>UniRef50_UPI0000499027 Cluster: hypothetical protein 189.t00012;
           n=1; Entamoeba histolytica HM-1:IMSS|Rep: hypothetical
           protein 189.t00012 - Entamoeba histolytica HM-1:IMSS
          Length = 713

 Score = 32.7 bits (71), Expect = 5.4
 Identities = 16/48 (33%), Positives = 30/48 (62%)
 Frame = +3

Query: 96  VIPRILRSPPPTHPLIEDVVMATNQAIIDYKVKIADNNLVTHKELALK 239
           +I RIL S P  + L ED+    N+++++ +++   +N+ T+  LALK
Sbjct: 117 IIMRILNSMPDNYTLTEDIYKKINKSLVE-RLQDTQSNVRTYAVLALK 163


>UniRef50_Q5D5G3 Cluster: Phage tail sheath protein; n=1; Wolbachia
           endosymbiont of Drosophila mojavensis|Rep: Phage tail
           sheath protein - Wolbachia endosymbiont of Drosophila
           mojavensis
          Length = 296

 Score = 32.7 bits (71), Expect = 5.4
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 5/71 (7%)
 Frame = +3

Query: 84  ALLVVIPRILRSPPPTHPLIEDVVMATNQAIIDYKVK----IADNNLVTHKELALKVSSI 251
           +++ V+PRIL +P  TH L ED       A++    K    I  +   T+ E A+K    
Sbjct: 102 SIVHVLPRILIAPQFTHQLPEDGKNPAVAALVPIAEKLRSIIVADGPNTNDEEAIKWRKS 161

Query: 252 IG-TRVYVFDP 281
           +G +RVYV DP
Sbjct: 162 VGSSRVYVVDP 172


>UniRef50_A3Q486 Cluster: Transcriptional regulator, TetR family;
           n=1; Mycobacterium sp. JLS|Rep: Transcriptional
           regulator, TetR family - Mycobacterium sp. (strain JLS)
          Length = 236

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 20/52 (38%), Positives = 27/52 (51%)
 Frame = +3

Query: 297 TPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSF 452
           TP   TVL+D I  VLKD+ TA+LS S+        I R  V    + S+ +
Sbjct: 155 TPKLSTVLHDAIEPVLKDS-TAVLSGSVTLDEVVDLIVRMAVSHYFMPSNDY 205


>UniRef50_A4R449 Cluster: Putative uncharacterized protein; n=1;
            Magnaporthe grisea|Rep: Putative uncharacterized protein
            - Magnaporthe grisea (Rice blast fungus) (Pyricularia
            grisea)
          Length = 4052

 Score = 32.3 bits (70), Expect = 7.2
 Identities = 17/67 (25%), Positives = 33/67 (49%)
 Frame = +3

Query: 318  LYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLVDSRHVSSDSFGVYVKS*SLILHSFG 497
            LY  +     + +T  L   + ASLPS +++  L+   H++ DSF + +    L+    G
Sbjct: 2664 LYHELHHAQFNLETGELVKMVLASLPSGQVHHLLIGYHHINMDSFSMAILMSELLQLYAG 2723

Query: 498  LLVSSRS 518
             ++  R+
Sbjct: 2724 TVLEPRT 2730


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 483,764,474
Number of Sequences: 1657284
Number of extensions: 8559921
Number of successful extensions: 23982
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 23397
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 23975
length of database: 575,637,011
effective HSP length: 95
effective length of database: 418,195,031
effective search space used: 33873797511
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)