Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6m21
         (652 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius...    41   0.030
UniRef50_Q49549 Cluster: P3; n=1; Mycoplasma hyorhinis|Rep: P3 -...    38   0.16 
UniRef50_Q12IA3 Cluster: Putative uncharacterized protein precur...    33   4.5  
UniRef50_A3ZU56 Cluster: Putative uncharacterized protein; n=1; ...    33   5.9  

>UniRef50_A7KCY9 Cluster: Ribosomal protein L23a; n=1; Heliconius
           melpomene|Rep: Ribosomal protein L23a - Heliconius
           melpomene
          Length = 221

 Score = 40.7 bits (91), Expect = 0.030
 Identities = 20/28 (71%), Positives = 21/28 (75%)
 Frame = +2

Query: 569 PKLPNPSQQFXKLKIAPKPKKTGIKGQK 652
           P  P P+    KLKIAPKPKKTGIKGQK
Sbjct: 121 PAKPKPAAA--KLKIAPKPKKTGIKGQK 146


>UniRef50_Q49549 Cluster: P3; n=1; Mycoplasma hyorhinis|Rep: P3 -
           Mycoplasma hyorhinis
          Length = 1187

 Score = 38.3 bits (85), Expect = 0.16
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 150 TCVSQNTGTCPESSCACPETSCACPE 227
           +C  ++ G C E SCACP T+CAC E
Sbjct: 380 SCAQEHCG-CQEESCACPNTTCACTE 404



 Score = 38.3 bits (85), Expect = 0.16
 Identities = 14/26 (53%), Positives = 18/26 (69%)
 Frame = +3

Query: 150 TCVSQNTGTCPESSCACPETSCACPE 227
           +C  ++ G C E SCACP T+CAC E
Sbjct: 836 SCAQEHCG-CQEESCACPNTTCACTE 860



 Score = 34.3 bits (75), Expect = 2.6
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 150 TCVSQN-TGTCPESSCACPETSCACPET 230
           TC  Q  T +C +  C C E SCACP T
Sbjct: 371 TCGCQEATCSCAQEHCGCQEESCACPNT 398



 Score = 34.3 bits (75), Expect = 2.6
 Identities = 14/28 (50%), Positives = 16/28 (57%), Gaps = 1/28 (3%)
 Frame = +3

Query: 150 TCVSQN-TGTCPESSCACPETSCACPET 230
           TC  Q  T +C +  C C E SCACP T
Sbjct: 827 TCGCQEATCSCAQEHCGCQEESCACPNT 854


>UniRef50_Q12IA3 Cluster: Putative uncharacterized protein
           precursor; n=1; Shewanella denitrificans OS217|Rep:
           Putative uncharacterized protein precursor - Shewanella
           denitrificans (strain OS217 / ATCC BAA-1090 / DSM 15013)
          Length = 149

 Score = 33.5 bits (73), Expect = 4.5
 Identities = 12/19 (63%), Positives = 15/19 (78%)
 Frame = +3

Query: 159 SQNTGTCPESSCACPETSC 215
           SQN+G C E+SC CP +SC
Sbjct: 87  SQNSGDCCENSCRCPVSSC 105


>UniRef50_A3ZU56 Cluster: Putative uncharacterized protein; n=1;
           Blastopirellula marina DSM 3645|Rep: Putative
           uncharacterized protein - Blastopirellula marina DSM
           3645
          Length = 155

 Score = 33.1 bits (72), Expect = 5.9
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +3

Query: 150 TCVSQNTGTCPESSCACPETSCACPE 227
           TC +      PE +C  PE SCA PE
Sbjct: 94  TCCAPEPACAPEPTCCAPEPSCAAPE 119


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 235,287,949
Number of Sequences: 1657284
Number of extensions: 2302948
Number of successful extensions: 7216
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7187
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 48760335122
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)