Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6m21
         (652 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242           29   4.2  
03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,340...    27   9.8  

>01_01_0158 + 1374169-1374324,1374464-1375295,1375977-1376242
          Length = 417

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +3

Query: 156 VSQNTGTCPESSCACPETSC 215
           ++++  TCP + C CPE  C
Sbjct: 116 ITEHEKTCPHAPCFCPEPGC 135


>03_01_0438 + 3399203-3399297,3399389-3399480,3399638-3399750,
            3400345-3400610,3400793-3400864,3401023-3401098,
            3401241-3401339,3401432-3401586,3401679-3401783,
            3401880-3401966,3402459-3402543,3402626-3402734,
            3403468-3403544,3403635-3403715,3404137-3404328,
            3404415-3404528,3404650-3404742,3404864-3404990,
            3405075-3405151,3405455-3405502,3405588-3405657,
            3405737-3405810,3405895-3406005,3406222-3406300,
            3406936-3408320
          Length = 1293

 Score = 27.5 bits (58), Expect = 9.8
 Identities = 12/26 (46%), Positives = 14/26 (53%)
 Frame = +2

Query: 575  LPNPSQQFXKLKIAPKPKKTGIKGQK 652
            LPNP      +K  PKP +TGI   K
Sbjct: 1093 LPNPKLHSDLMKTPPKPPRTGIDPAK 1118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,696,392
Number of Sequences: 37544
Number of extensions: 67453
Number of successful extensions: 206
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1620349964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)