Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6m08
         (703 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   2.1  
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    23   2.8  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              23   3.7  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    22   4.9  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    22   4.9  
AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine rece...    21   8.6  

>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -1

Query: 127 KLCVCVCFIYHIKWT 83
           K  + +CF+Y + WT
Sbjct: 274 KAAITICFLYVLSWT 288


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 23.0 bits (47), Expect = 2.8
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = -3

Query: 164 YLGNISIKDNIIKTLCVCVFYL 99
           Y  N+ +   +I  LCV VFYL
Sbjct: 236 YTVNLILPTVLISFLCVLVFYL 257


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 22.6 bits (46), Expect = 3.7
 Identities = 14/53 (26%), Positives = 26/53 (49%), Gaps = 3/53 (5%)
 Frame = -3

Query: 158 GNISIKDNIIKTLCVCV---FYLSHKMDVWQKSQPILVFFSYITRFNLILKLI 9
           GNI ++D  ++  C C+   F +  K +V+ K Q I      +   N + +L+
Sbjct: 50  GNIDVEDKKVQLYCECILKNFNILDKNNVF-KPQGIKAVMELLIDENSVKQLV 101


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/53 (18%), Positives = 24/53 (45%)
 Frame = +3

Query: 420 QIPDMLYNEKMPPRAKKLFVEAFTKYHKMNGGDEDIAMHKARKALEEKYVKIN 578
           Q+ + +   K+P   ++   E F   ++    DE++ + +  + L E  +  N
Sbjct: 394 QVEEYMAYRKLPREMRQRITEYFEHRYQGKFFDEELILGELSEKLREDVINYN 446


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 22.2 bits (45), Expect = 4.9
 Identities = 10/53 (18%), Positives = 24/53 (45%)
 Frame = +3

Query: 420 QIPDMLYNEKMPPRAKKLFVEAFTKYHKMNGGDEDIAMHKARKALEEKYVKIN 578
           Q+ + +   K+P   ++   E F   ++    DE++ + +  + L E  +  N
Sbjct: 362 QVEEYMAYRKLPREMRQRITEYFEHRYQGKFFDEELILGELSEKLREDVINYN 414


>AY921573-1|AAX62923.1|  694|Apis mellifera D2-like dopamine
           receptor protein.
          Length = 694

 Score = 21.4 bits (43), Expect = 8.6
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = -1

Query: 589 FFNVFILTYFSSSAFLALCIAM 524
           F+N   + Y S S+F   CI M
Sbjct: 338 FYNTDFIIYSSLSSFYIPCIIM 359


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,761
Number of Sequences: 438
Number of extensions: 3759
Number of successful extensions: 9
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21561255
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)