Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6m04
         (723 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit L15|...    31   0.17 
SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase Ppk29|Schizos...    26   6.3  
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    26   6.3  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    25   8.3  

>SPBC9B6.06 |mrpl10||mitochondrial ribosomal protein subunit
           L15|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 31.1 bits (67), Expect = 0.17
 Identities = 18/49 (36%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +3

Query: 327 GIGQSRPYTFDPSFGFFRYKLTELQPKKWKPRGHV-VPLPLGIGQSSYW 470
           G GQ R     P F   +  +T+L PK     GH+  PL LG+G+   W
Sbjct: 35  GSGQRRGRRIKPGFEGGQTPITKLFPKVGHSTGHLKKPLRLGLGRVQEW 83


>SPBC557.04 |ppk29||Ark1/Prk1 family protein kinase
           Ppk29|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 27/88 (30%), Positives = 37/88 (42%)
 Frame = -3

Query: 412 HFLGCSSVNLYRKNPKLGSKVYGLLCPIPSGRGTTCPRGFHFLGCSSVNLYRKNPKLGSK 233
           H L    + L + NP L   ++ L+C I   RGT  P    + G  S      N K+ S 
Sbjct: 272 HSLKNVIIALLQPNPCLRPNIFQLMCEICRLRGTALPFRDIYSGRESSFYDLHNRKIMSL 331

Query: 232 VYGT*GFKTAGFSGFSVITFDPVVSWSR 149
           +  T    T  F+G  V+   P V  SR
Sbjct: 332 LRQT---TTTPFAGNQVMP-TPQVQGSR 355


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 412 HFLGCSSVNLYRKNPKLGSKVYG 344
           HF+GCS +  Y    KLG   +G
Sbjct: 26  HFVGCSHLTDYHLMEKLGEGTFG 48



 Score = 25.8 bits (54), Expect = 6.3
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 292 HFLGCSSVNLYRKNPKLGSKVYG 224
           HF+GCS +  Y    KLG   +G
Sbjct: 26  HFVGCSHLTDYHLMEKLGEGTFG 48


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +2

Query: 557 FHANGDVATAAFNSGWYRTSPK 622
           +H +  V TAAFNS   RTS K
Sbjct: 590 YHNSSHVPTAAFNSPIMRTSTK 611


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,952,416
Number of Sequences: 5004
Number of extensions: 64400
Number of successful extensions: 181
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 181
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 339215786
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)