Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6m04
         (723 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_0914 + 25920277-25920405,25920783-25920810,25920890-259209...    31   0.70 
08_01_0634 - 5511393-5511858,5512581-5512879                           29   4.9  
04_04_0996 + 29990255-29990425,29990797-29990841,29991024-299910...    29   4.9  
08_01_0639 + 5544411-5544413,5545000-5545343,5546420-5546849           28   8.6  
06_02_0225 + 13257655-13260693                                         28   8.6  

>06_03_0914 +
           25920277-25920405,25920783-25920810,25920890-25920990,
           25921356-25921479,25921793-25921903,25922222-25922397,
           25922766-25922848,25922935-25923007,25923630-25923695,
           25923776-25923818,25924600-25924739,25924878-25925090,
           25925397-25925481,25925558-25925852,25926855-25927110,
           25927237-25927450,25927701-25927912,25928054-25928203
          Length = 832

 Score = 31.5 bits (68), Expect = 0.70
 Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 5/56 (8%)
 Frame = -3

Query: 301 RGFHFLGCSSVNLYRKNPKLGSKVYGT*GFKTAGFS--GFSVITF---DPVVSWSR 149
           + FH   C+ +NL    P+L  K+     +K   F+  G  +  F   D VV+WS+
Sbjct: 37  KAFHVYNCAKLNLVLSGPQLPKKIRALASYKDYTFAAYGSDIAVFKRTDQVVTWSK 92


>08_01_0634 - 5511393-5511858,5512581-5512879
          Length = 254

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 12/31 (38%), Positives = 20/31 (64%)
 Frame = +2

Query: 446 RNWTKQLLEPLPALSSKLFLVSALIQIGMLC 538
           R+W++ LL+ L  + +KL  V  LI  G++C
Sbjct: 2   RDWSELLLDALSVVFTKLGAVEVLIGAGLVC 32


>04_04_0996 +
           29990255-29990425,29990797-29990841,29991024-29991098,
           29991481-29991691,29992057-29992442,29993202-29993425,
           29993529-29993664,29993699-29993761,29993842-29994021
          Length = 496

 Score = 28.7 bits (61), Expect = 4.9
 Identities = 15/54 (27%), Positives = 27/54 (50%)
 Frame = +1

Query: 31  HDNRPLRVQKIRKIVKSAQIIVKVVSKEAEGDEERSRENRVTRRPLGQKLLQKN 192
           H + P R Q+     K+  ++++ V KE EG+  R       R+P   K+++ N
Sbjct: 369 HSSEPCRYQENLATKKNPTVLIEEVKKELEGELSRQHPCPNCRQP-NPKIVEDN 421


>08_01_0639 + 5544411-5544413,5545000-5545343,5546420-5546849
          Length = 258

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 9/35 (25%), Positives = 21/35 (60%)
 Frame = +2

Query: 434 PPSTRNWTKQLLEPLPALSSKLFLVSALIQIGMLC 538
           PP +R+W++  ++    + +KL  +  L+  G++C
Sbjct: 15  PPESRDWSELPMDAFSVIFAKLGAIELLMGAGLVC 49


>06_02_0225 + 13257655-13260693
          Length = 1012

 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 264 KLTELQPKKWKPRGHVVPLPLGI 332
           K+ +L  K WKP    VP+P GI
Sbjct: 128 KMEDLVEKPWKPLSRKVPIPPGI 150



 Score = 27.9 bits (59), Expect = 8.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = +3

Query: 384 KLTELQPKKWKPRGHVVPLPLGI 452
           K+ +L  K WKP    VP+P GI
Sbjct: 128 KMEDLVEKPWKPLSRKVPIPPGI 150


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,499,333
Number of Sequences: 37544
Number of extensions: 451002
Number of successful extensions: 1125
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 938
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1124
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1886372480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)