Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6m04
         (723 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

M55172-1|AAA62824.1| 2316|Homo sapiens large aggregating cartila...    30   9.6  
BC036445-1|AAH36445.1|  721|Homo sapiens aggrecan protein.             30   9.6  
AK128759-1|BAC87603.1|  140|Homo sapiens protein ( Homo sapiens ...    30   9.6  

>M55172-1|AAA62824.1| 2316|Homo sapiens large aggregating cartilage
           proteoglycan core protein protein.
          Length = 2316

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +3

Query: 159 ETTGSKVITEKP---EKPAVLKP*VPYTFDPSFGFFRYKLTELQP-KKWKPRGHVVPLPL 326
           E  GS ++T KP     P+ L+P  P+TF P  G   +   E +  +  +P G   P   
Sbjct: 392 EARGSVILTVKPIFEVSPSPLEPEEPFTFAPEIGATAFAEVENETGEATRPWGFPTP--- 448

Query: 327 GIGQSRPYT 353
           G+G +  +T
Sbjct: 449 GLGPATAFT 457


>BC036445-1|AAH36445.1|  721|Homo sapiens aggrecan protein.
          Length = 721

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 21/69 (30%), Positives = 33/69 (47%), Gaps = 4/69 (5%)
 Frame = +3

Query: 159 ETTGSKVITEKP---EKPAVLKP*VPYTFDPSFGFFRYKLTELQP-KKWKPRGHVVPLPL 326
           E  GS ++T KP     P+ L+P  P+TF P  G   +   E +  +  +P G   P   
Sbjct: 392 EARGSVILTVKPIFEVSPSPLEPEEPFTFAPEIGATAFAEVENETGEATRPWGFPTP--- 448

Query: 327 GIGQSRPYT 353
           G+G +  +T
Sbjct: 449 GLGPATAFT 457


>AK128759-1|BAC87603.1|  140|Homo sapiens protein ( Homo sapiens
           cDNA FLJ45035 fis, clone BRAWH3019594. ).
          Length = 140

 Score = 29.9 bits (64), Expect = 9.6
 Identities = 16/53 (30%), Positives = 22/53 (41%)
 Frame = -3

Query: 460 LCPIPSGRGTTCPRGFHFLGCSSVNLYRKNPKLGSKVYGLLCPIPSGRGTTCP 302
           LCP+    G  CP    F     V+         S+++G LCP+    G  CP
Sbjct: 75  LCPVSETFGRLCPVSEMFARLCPVSETFGRLSPVSEMFGRLCPVSEMFGRLCP 127


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 104,123,251
Number of Sequences: 237096
Number of extensions: 2395164
Number of successful extensions: 6022
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4790
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6015
length of database: 76,859,062
effective HSP length: 88
effective length of database: 55,994,614
effective search space used: 8511181328
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)