Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6m04
         (723 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and en...    33   0.16 
L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RET...    33   0.16 
L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RET...    33   0.16 
AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of e...    30   1.9  
Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical pr...    29   2.5  
Z81120-2|CAB03344.2|  426|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical p...    29   3.4  
Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical p...    29   3.4  
U41034-3|AAA82380.2|  127|Caenorhabditis elegans Hypothetical pr...    29   3.4  
Z75546-3|CAA99891.1|  581|Caenorhabditis elegans Hypothetical pr...    29   4.4  
AF098991-1|AAC67449.2|  758|Caenorhabditis elegans Hypothetical ...    28   7.8  

>U15406-1|AAA50456.1| 2272|Caenorhabditis elegans gag, pol and env
           protein precursor protein.
          Length = 2272

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 14/92 (15%)
 Frame = +1

Query: 16  REPKRHDNRPLRVQKIRKIVKSAQIIVKVVSKEAEGDEER-------------SRENRVT 156
           RE  R  NR L+ +K  ++++ +QI+V+   K    +EER             +R N   
Sbjct: 204 RETNRDLNRQLK-EKSEELMQKSQILVETTLKLKAVEEERDKRKKEEQFREADARSNNYA 262

Query: 157 RR-PLGQKLLQKNPKNLQF*SPKCHTPSTRVS 249
           R+  +   + QKN +N+Q    +C T S+R++
Sbjct: 263 RKGEISSNIEQKNHQNIQIMDTRCTTSSSRMN 294


>L23646-13|AAA28035.2| 2175|Caenorhabditis elegans C. elegans RETR-1
           protein, isoforma protein.
          Length = 2175

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 14/92 (15%)
 Frame = +1

Query: 16  REPKRHDNRPLRVQKIRKIVKSAQIIVKVVSKEAEGDEER-------------SRENRVT 156
           RE  R  NR L+ +K  ++++ +QI+V+   K    +EER             +R N   
Sbjct: 107 RETNRDLNRQLK-EKSEELMQKSQILVETTLKLKAVEEERDKRKKEEQFREADARSNNYA 165

Query: 157 RR-PLGQKLLQKNPKNLQF*SPKCHTPSTRVS 249
           R+  +   + QKN +N+Q    +C T S+R++
Sbjct: 166 RKGEISSNIEQKNHQNIQIMDTRCTTSSSRMN 197


>L23646-12|AAL02516.1| 2186|Caenorhabditis elegans C. elegans RETR-1
           protein, isoformb protein.
          Length = 2186

 Score = 33.5 bits (73), Expect = 0.16
 Identities = 26/92 (28%), Positives = 46/92 (50%), Gaps = 14/92 (15%)
 Frame = +1

Query: 16  REPKRHDNRPLRVQKIRKIVKSAQIIVKVVSKEAEGDEER-------------SRENRVT 156
           RE  R  NR L+ +K  ++++ +QI+V+   K    +EER             +R N   
Sbjct: 118 RETNRDLNRQLK-EKSEELMQKSQILVETTLKLKAVEEERDKRKKEEQFREADARSNNYA 176

Query: 157 RR-PLGQKLLQKNPKNLQF*SPKCHTPSTRVS 249
           R+  +   + QKN +N+Q    +C T S+R++
Sbjct: 177 RKGEISSNIEQKNHQNIQIMDTRCTTSSSRMN 208


>AC025724-1|AAG23375.2| 4177|Caenorhabditis elegans Enhancer of efl-1
            mutant phenotypeprotein 1 protein.
          Length = 4177

 Score = 29.9 bits (64), Expect = 1.9
 Identities = 21/67 (31%), Positives = 35/67 (52%)
 Frame = +3

Query: 234  FDPSFGFFRYKLTELQPKKWKPRGHVVPLPLGIGQSRPYTFDPSFGFFRYKLTELQPKKW 413
            FD    +FR +LT+L+P   + R + V + +    SR   F  SF     +L  L+P +W
Sbjct: 3794 FDVKRKYFRKELTKLEPSMPRYRRNDVSVQV----SRNRVFSDSF----RELFRLRPSEW 3845

Query: 414  KPRGHVV 434
            K R +++
Sbjct: 3846 KNRFYII 3852


>Z75536-2|CAA99830.2| 4171|Caenorhabditis elegans Hypothetical protein
            F18C12.1 protein.
          Length = 4171

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 24/87 (27%), Positives = 39/87 (44%), Gaps = 1/87 (1%)
 Frame = +1

Query: 52   VQKIRKIVKSAQIIVK-VVSKEAEGDEERSRENRVTRRPLGQKLLQKNPKNLQF*SPKCH 228
            +  + K  +SA+II K +V  E    E  ++++      L    L  +  NLQF +P  +
Sbjct: 3352 LDSLNKSKESAEIITKSIVESEQLHKELTTQKDIYVPLSLFTSSLFFSFSNLQFHNPMYN 3411

Query: 229  TPSTRVSDFSGTN*QSCSLKSGNRVDT 309
                 +    G   +SC  KS  RV+T
Sbjct: 3412 YSVNTIMHLFGKTIKSCEDKSSTRVET 3438


>Z81120-2|CAB03344.2|  426|Caenorhabditis elegans Hypothetical
           protein T12D8.4 protein.
          Length = 426

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 19/68 (27%), Positives = 30/68 (44%), Gaps = 5/68 (7%)
 Frame = +3

Query: 225 PYTFDPSFGFFRYKLTELQPKKWK----PRG-HVVPLPLGIGQSRPYTFDPSFGFFRYKL 389
           PY  +     + +K T ++  K K    P G H VP    + +S P +F+  FG  RY  
Sbjct: 69  PYFLEQFNPGYTHKFTVVKDGKEKERILPAGIHQVPFSYTLPKSLPSSFEGEFGHIRYTC 128

Query: 390 TELQPKKW 413
             +  + W
Sbjct: 129 KAICERPW 136


>Z48045-11|CAM33500.1|  887|Caenorhabditis elegans Hypothetical
           protein C41C4.5b protein.
          Length = 887

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 306 HVVPLPLGIGQSRPYTFDPSFGFFRYKLTELQPKKWKPRGH 428
           H+VP P   G S P  F  SFG    +   L+P    P GH
Sbjct: 494 HIVPFPDAFGYSAPTGFMSSFGVRMKQFIRLEP----PYGH 530


>Z48045-10|CAA88101.2|  849|Caenorhabditis elegans Hypothetical
           protein C41C4.5a protein.
          Length = 849

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 16/41 (39%), Positives = 19/41 (46%)
 Frame = +3

Query: 306 HVVPLPLGIGQSRPYTFDPSFGFFRYKLTELQPKKWKPRGH 428
           H+VP P   G S P  F  SFG    +   L+P    P GH
Sbjct: 456 HIVPFPDAFGYSAPTGFMSSFGVRMKQFIRLEP----PYGH 492


>U41034-3|AAA82380.2|  127|Caenorhabditis elegans Hypothetical
           protein M02D8.2 protein.
          Length = 127

 Score = 29.1 bits (62), Expect = 3.4
 Identities = 10/33 (30%), Positives = 21/33 (63%)
 Frame = +1

Query: 55  QKIRKIVKSAQIIVKVVSKEAEGDEERSRENRV 153
           +K+RK +K  +  +++  K+ + +E+  R NRV
Sbjct: 91  KKLRKTIKKRECKIRIFKKKRDDNEDEHRRNRV 123


>Z75546-3|CAA99891.1|  581|Caenorhabditis elegans Hypothetical
           protein R05D11.4 protein.
          Length = 581

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/68 (20%), Positives = 38/68 (55%), Gaps = 2/68 (2%)
 Frame = +1

Query: 7   DRNREPKRHDNRPLRVQKIRK-IVKSAQIIVKVVSKE-AEGDEERSRENRVTRRPLGQKL 180
           DR ++  +H  +  ++  +++ ++K  +++ K  ++E A+   E     +  ++   +KL
Sbjct: 514 DRKKDMLKHAPKRHKIAIVKEQVIKKKKMLAKAAAEEKAKNKTETQTAEKPEKKIKKKKL 573

Query: 181 LQKNPKNL 204
           ++KN KN+
Sbjct: 574 IKKNNKNI 581


>AF098991-1|AAC67449.2|  758|Caenorhabditis elegans Hypothetical
           protein F59H5.1 protein.
          Length = 758

 Score = 27.9 bits (59), Expect = 7.8
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +3

Query: 357 DPSFGFFRYKLTELQPKKWKPRGHVVPLPLGIGQSSYWNR 476
           D S   FR+ L E + +K    G V    +G+    YW R
Sbjct: 79  DESLQLFRFVLNECRSQKPGRVGRVAKKRVGVNSMKYWER 118


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,522,174
Number of Sequences: 27780
Number of extensions: 371917
Number of successful extensions: 1127
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 909
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1126
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1697838058
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)