Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6l20
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253 32 0.44
04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388 32 0.44
06_03_0757 + 24267599-24268882 29 3.1
10_07_0161 - 13674631-13675433,13675793-13675862 28 7.1
09_02_0336 - 7397745-7398308,7398813-7400723 28 7.1
05_07_0340 + 29389314-29389627,29389966-29390112,29390654-293907... 28 7.1
03_02_0870 + 11964135-11964224,11965013-11965175,11965262-119653... 28 7.1
12_02_0792 - 23191120-23191313,23191419-23191775,23192027-231921... 27 9.4
09_06_0341 + 22406709-22407860 27 9.4
05_06_0014 + 24854462-24854570,24854958-24855065,24855240-248554... 27 9.4
>04_03_0382 - 15166553-15166794,15167486-15167730,15168760-15169253
Length = 326
Score = 31.9 bits (69), Expect = 0.44
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +2
Query: 14 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 193
CI+ + C +R+ + + E + +TYE+ E LK ++ E + + K +A
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289
Query: 194 LSTLEMTQ 217
TL++ Q
Sbjct: 290 AETLDVKQ 297
>04_03_0346 + 14718686-14719179,14720208-14720452,14721144-14721388
Length = 327
Score = 31.9 bits (69), Expect = 0.44
Identities = 17/68 (25%), Positives = 33/68 (48%)
Frame = +2
Query: 14 CIKMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAM 193
CI+ + C +R+ + + E + +TYE+ E LK ++ E + + K +A
Sbjct: 230 CIEQVQRACEAMRSCFTDIRTFEILLRTYEVREGGLKGATTNEESNAVPLAQKKRKLLAA 289
Query: 194 LSTLEMTQ 217
TL++ Q
Sbjct: 290 AETLDVKQ 297
>06_03_0757 + 24267599-24268882
Length = 427
Score = 29.1 bits (62), Expect = 3.1
Identities = 8/22 (36%), Positives = 12/22 (54%)
Frame = +3
Query: 165 NWRSANTWLCSAPWK*PSRCWK 230
+WR A W+C PW + W+
Sbjct: 348 SWRPAGPWVCFNPWPAQQQAWR 369
>10_07_0161 - 13674631-13675433,13675793-13675862
Length = 290
Score = 27.9 bits (59), Expect = 7.1
Identities = 8/22 (36%), Positives = 11/22 (50%)
Frame = +3
Query: 165 NWRSANTWLCSAPWK*PSRCWK 230
+WR A W+C PW W+
Sbjct: 229 SWRPAGPWVCFNPWPAQQLAWR 250
>09_02_0336 - 7397745-7398308,7398813-7400723
Length = 824
Score = 27.9 bits (59), Expect = 7.1
Identities = 19/72 (26%), Positives = 33/72 (45%)
Frame = +2
Query: 20 KMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLS 199
+MK +K N V + EI + K + + FD+K+L ++I +KY LS
Sbjct: 616 EMKSMKLNDVWDLEEIPKGAKTETKKFLSSNFDMKDLGEASYVLGIEIHRDRTKYALGLS 675
Query: 200 TLEMTQPLLEIF 235
+ +L+ F
Sbjct: 676 QKTYIEKVLKKF 687
>05_07_0340 +
29389314-29389627,29389966-29390112,29390654-29390789,
29391098-29391199,29391801-29391920,29392033-29392113,
29392578-29392918,29393069-29393314,29394195-29394519,
29395123-29395356,29395437-29395691
Length = 766
Score = 27.9 bits (59), Expect = 7.1
Identities = 12/30 (40%), Positives = 19/30 (63%)
Frame = -3
Query: 96 VFWIFSSLFTISVTVRTLLHLTRFIFIHFF 7
V+W S+ +S+TVR L+ F F++FF
Sbjct: 355 VYWNNLSIPFVSLTVRRLIVAVAFFFLNFF 384
>03_02_0870 +
11964135-11964224,11965013-11965175,11965262-11965380,
11965971-11966083,11966179-11966234,11966320-11966417,
11966588-11966725,11966820-11967125,11967208-11967471,
11967587-11967754,11967838-11968056,11968115-11968158,
11968761-11968830,11968949-11969110,11969672-11969779,
11969873-11969910,11970121-11970265,11970800-11970926,
11971037-11971230,11971529-11971659,11972014-11972089,
11972218-11972328,11972465-11972647,11973264-11973407,
11973946-11973969,11974555-11974728,11974808-11975155,
11975232-11975561,11975776-11975961,11976052-11977026,
11977145-11977399
Length = 1852
Score = 27.9 bits (59), Expect = 7.1
Identities = 17/57 (29%), Positives = 30/57 (52%)
Frame = +2
Query: 59 TEIVNSDEKIQKTYELAEFDLKNLSSLESYETLKIKLALSKYMAMLSTLEMTQPLLE 229
TE+ S+++ K E+ E D+ + S + YET ++ + SK LS L +P +
Sbjct: 84 TELQLSNDRQSKPDEVTEDDMPSTSGRQLYET-EVPASSSKKHCSLSPLPAYEPAFD 139
>12_02_0792 -
23191120-23191313,23191419-23191775,23192027-23192108,
23192186-23193097,23193190-23193346,23193540-23193694,
23194667-23194819,23195334-23195627,23195711-23195896,
23196062-23196662,23196868-23196992,23197101-23197197,
23197299-23197411,23198129-23198233
Length = 1176
Score = 27.5 bits (58), Expect = 9.4
Identities = 19/60 (31%), Positives = 25/60 (41%)
Frame = -2
Query: 550 FALRGAKRLGYPHVAVIVFKVY*SLGVKLAA*HFNDRRSVDGAQQHPLVFCKQNGFSGNA 371
F +RG K PH V+ F + L A H N+RR V G + L + NA
Sbjct: 700 FMIRGKKNFLPPHPLVMGFGILFRLDESSLASHLNERR-VRGEDEEALPDVESQKLESNA 758
>09_06_0341 + 22406709-22407860
Length = 383
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/44 (34%), Positives = 25/44 (56%)
Frame = +2
Query: 20 KMKRVKCNKVRTVTEIVNSDEKIQKTYELAEFDLKNLSSLESYE 151
+MK V + E+ +D +++ EL+ DLKNL+ +ES E
Sbjct: 310 RMKCVAVASKHPIYELNAADLVVKQLDELSVVDLKNLADIESPE 353
>05_06_0014 +
24854462-24854570,24854958-24855065,24855240-24855432,
24855892-24856150,24856236-24856292,24856370-24856417,
24856725-24856811,24856885-24856942,24857084-24857151,
24857279-24857374,24857483-24857539,24857906-24857952,
24858184-24858210,24858312-24858504
Length = 468
Score = 27.5 bits (58), Expect = 9.4
Identities = 11/29 (37%), Positives = 17/29 (58%)
Frame = +2
Query: 296 HNRFHPLVTNFTNKMEFVVTETNDTSIPG 382
H FH + + TNK+E V++ T + I G
Sbjct: 427 HRLFHHPIDDCTNKIEHVISRTEQSFISG 455
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,913,753
Number of Sequences: 37544
Number of extensions: 311208
Number of successful extensions: 878
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 836
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 877
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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