Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6l17
         (672 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces pombe...    28   1.4  
SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces pomb...    27   1.9  
SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    27   2.5  
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    27   3.3  
SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces po...    26   4.3  
SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|c...    26   4.3  
SPCC1020.08 |||wybutosine biosynthesis protein Tyw1|Schizosaccha...    26   5.7  
SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19 |Schizosa...    26   5.7  
SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner me...    25   7.5  

>SPBP4H10.16c |||phosphatase activator |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 295

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -1

Query: 168 PTAQVQTHPRFHKLLVFQSKQARTC 94
           P +  +  P +HKLL+F  K AR C
Sbjct: 231 PVSDPEYFPVYHKLLLFWQKPARKC 255


>SPAC22G7.02 |kap111||karyopherin Kap111|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 990

 Score = 27.5 bits (58), Expect = 1.9
 Identities = 16/57 (28%), Positives = 27/57 (47%)
 Frame = -2

Query: 461 GQRCVVDVLTQISASIFGAHSPGGVFRACIIEFLTYSFNIKLSMDPDCSVCCTDMIS 291
           G+  ++DV      + F   S    F+A +I FLT+S ++ L       + C  MI+
Sbjct: 679 GESPIIDVEQSTQETTFWQQSCIAEFQAKLISFLTHSESMALQYSDVVGLICKIMIA 735


>SPBC13E7.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 273

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = +2

Query: 527 RSRLAAHHRALHRTD-PRGRSSDPPRSHFA 613
           R RLAAH + LH  + PRG  ++  RS ++
Sbjct: 225 RRRLAAHRKELHEANRPRGGLNNSSRSAYS 254


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 8/23 (34%), Positives = 15/23 (65%)
 Frame = +1

Query: 463 WIIAVHCLSTSRTLMCTRRNKPL 531
           W +A+H + ++  L CT +N+ L
Sbjct: 147 WYVALHGIDSASALSCTEKNRAL 169


>SPBC15C4.02 |||ABC1 kinase family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 594

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 10/36 (27%), Positives = 20/36 (55%), Gaps = 3/36 (8%)
 Frame = -1

Query: 450 CSRCTHTNICQHLWSSQPWW---SLQGLHH*IPYIF 352
           C RC + +    LW+S+ +W     +G ++ + Y+F
Sbjct: 540 CLRCVYDDKMDSLWNSRSFWVSKVFKGTYYRLSYLF 575


>SPAP8A3.12c |||tripeptidylpeptidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1274

 Score = 26.2 bits (55), Expect = 4.3
 Identities = 15/44 (34%), Positives = 24/44 (54%), Gaps = 1/44 (2%)
 Frame = -1

Query: 174 VSPTAQVQTHPRFHKLLVFQ-SKQARTCVYFLFLVYLKVSRLPN 46
           V PTA    H  F K+L +  S ++R CV+ + +  +K S + N
Sbjct: 661 VDPTALAPGH-HFGKVLAYDASNESRRCVFEIPVTVMKPSSISN 703


>SPCC1020.08 |||wybutosine biosynthesis protein
           Tyw1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 688

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 11/40 (27%), Positives = 18/40 (45%)
 Frame = +3

Query: 75  QEIENKHRCELVLIEIPVTYENVDEFVPALWETHTPKLMI 194
           +E      C L L+  P+ Y  ++EFV  L E      ++
Sbjct: 413 EEASRVRHCALSLVGEPIFYPYINEFVSMLHEREISSFLV 452


>SPAC30D11.09 |cwf19||complexed with Cdc5 protein Cwf19
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 639

 Score = 25.8 bits (54), Expect = 5.7
 Identities = 16/41 (39%), Positives = 19/41 (46%), Gaps = 2/41 (4%)
 Frame = +2

Query: 521 TNRSRLAAHHRALHRTDPRGR--SSDPPRSHFARHWAR*RR 637
           TN SR   HH + HR    GR   S+ P S  A   +R  R
Sbjct: 22  TNHSRRHRHHHSRHRESKHGRHDRSERPSSREAGDRSRHER 62


>SPBP4H10.03 |oxa102|oxa1, oxa1-2, oxa1sp2|mitochondrial inner
           membrane translocase Oxa102|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 409

 Score = 25.4 bits (53), Expect = 7.5
 Identities = 6/10 (60%), Positives = 8/10 (80%)
 Frame = -1

Query: 417 HLWSSQPWWS 388
           H+WS  PWW+
Sbjct: 108 HIWSGLPWWA 117


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,874,964
Number of Sequences: 5004
Number of extensions: 61869
Number of successful extensions: 173
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 166
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 307866294
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)