Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6l08
         (645 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pomb...    28   1.0  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    27   2.3  
SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||...    25   7.1  
SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces pom...    25   7.1  

>SPCC16C4.09 |sts5|orb4|RNB-like protein|Schizosaccharomyces pombe|chr
            3|||Manual
          Length = 1066

 Score = 28.3 bits (60), Expect = 1.0
 Identities = 24/85 (28%), Positives = 43/85 (50%), Gaps = 6/85 (7%)
 Frame = +2

Query: 344  KMYRQTALHKSQR----HLQLILWRDSSLSTE--PNKNDNLKILQLNTVTYGLASAPFLS 505
            ++ R+T L  + R    HL+     ++ L T+  P++ +N +ILQ   +  G       S
Sbjct: 795  EVLRETLLDAANRAVASHLRQEFRENAFLRTQRLPSR-ENCRILQSMAIQMGCV-LDLSS 852

Query: 506  TRCLLQLAKECTDDTIANIIKNDFY 580
            T+ LL+      DDT+ NI++  +Y
Sbjct: 853  TKSLLRSLSLIEDDTVRNILQLYYY 877


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/40 (32%), Positives = 21/40 (52%)
 Frame = +2

Query: 479 GLASAPFLSTRCLLQLAKECTDDTIANIIKNDFYIDDLNT 598
           GL   PF+S  CL  + ++C  +T+    K   Y+D  N+
Sbjct: 798 GLLDVPFVSYSCLHLVHRDCATETVCPKCKAG-YLDKKNS 836


>SPBC685.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 452

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +2

Query: 533 ECTDDTIANIIKNDFY 580
           +C DD +ANI   DFY
Sbjct: 249 KCVDDVVANIFGLDFY 264


>SPCC1682.08c |||RNA-binding protein Mcp2|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 703

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 13/35 (37%), Positives = 20/35 (57%)
 Frame = +2

Query: 110 HLSEVDRPRFGNYLPHHCVLRENSETTKLRVVFDA 214
           HL  + R ++GN++  H V  EN +   L+ V DA
Sbjct: 549 HLDGIARGQWGNWVVQHMV--ENGQGEDLKRVIDA 581


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,464,981
Number of Sequences: 5004
Number of extensions: 49401
Number of successful extensions: 88
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 88
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 289756512
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)