Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6l08
         (645 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0042 + 25351648-25351724,25351983-25352010,25352311-253523...    32   0.45 
08_01_0051 - 355392-355450,355507-355634,356271-356425,356883-35...    29   4.2  
04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784     29   4.2  
04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093           29   4.2  
06_01_1064 - 8609162-8610583                                           28   5.5  
04_04_0264 + 24035282-24035686,24036877-24037118,24037230-240377...    27   9.7  

>02_05_0042 +
           25351648-25351724,25351983-25352010,25352311-25352373,
           25352880-25352945,25353029-25353076,25353338-25353379,
           25353499-25353714,25354066-25354188,25354352-25354564,
           25354930-25355016,25355259-25355507,25356386-25356507,
           25357135-25357225,25358467-25358882,25359489-25359609
          Length = 653

 Score = 31.9 bits (69), Expect = 0.45
 Identities = 18/68 (26%), Positives = 32/68 (47%), Gaps = 4/68 (5%)
 Frame = +2

Query: 116 SEVDRPRFGNYLP-HHCVLRENSETTKLRVVFDASAKTSSGKSLNDIQ---AVGPVVQSD 283
           +++++  F    P HHCV R+N   TK  +   A      G  L  ++    +G +   D
Sbjct: 583 ADINKQDFHGRTPLHHCVRRKNDALTKHLLKRGARTTIKDGGGLTALERRMELGAITDED 642

Query: 284 LFSILLRF 307
           LF + +R+
Sbjct: 643 LFILFVRY 650


>08_01_0051 -
           355392-355450,355507-355634,356271-356425,356883-357012,
           357600-357739,358384-358552,360286-360557
          Length = 350

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 19/65 (29%), Positives = 32/65 (49%), Gaps = 2/65 (3%)
 Frame = -2

Query: 404 STKLTEGDVEIYARPFVGTFSL-YPLREQIGDRENVTKLRINQT-ALLDLQPVCHLTTSQ 231
           ++ L  G+  I+     G  +L  PLR ++G+R N+  + I  T +L  + P   LT   
Sbjct: 114 TSPLVNGEKSIFRDQVRGYSALGSPLRREVGNRHNIVSVTIVSTLSLSGVIPTEPLTWKL 173

Query: 230 MMFWL 216
           +  WL
Sbjct: 174 IKVWL 178


>04_03_0399 - 15414405-15416717,15416739-15417524,15417776-15417784
          Length = 1035

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 440 DNLKILQLNTVTYGLASAPFLSTRCLLQLAKE-CTD 544
           +NL++L+L+  T+  AS PFL  R L  L  + C D
Sbjct: 365 ENLRVLKLSLCTFRFASPPFLCCRGLRFLGLDNCLD 400


>04_01_0520 - 6852701-6855028,6855050-6855835,6856085-6856093
          Length = 1040

 Score = 28.7 bits (61), Expect = 4.2
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 1/36 (2%)
 Frame = +2

Query: 440 DNLKILQLNTVTYGLASAPFLSTRCLLQLAKE-CTD 544
           +NL++L+L+  T+  AS PFL  R L  L  + C D
Sbjct: 365 ENLRVLKLSLCTFRFASPPFLCCRGLRFLGLDNCLD 400


>06_01_1064 - 8609162-8610583
          Length = 473

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 13/41 (31%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
 Frame = +2

Query: 155 HHCVLRENSETTKLRVVFDASAKTSSGKSLN-DIQAVGPVV 274
           HHCV +E  E   + +       T +G +L  +I A+ P+V
Sbjct: 289 HHCVFQEEDEHGSIGINLSKDLMTIAGNALKANITAIAPLV 329


>04_04_0264 +
           24035282-24035686,24036877-24037118,24037230-24037750,
           24038262-24038746
          Length = 550

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 15/33 (45%), Positives = 20/33 (60%), Gaps = 3/33 (9%)
 Frame = -2

Query: 350 TFSLYPLR---EQIGDRENVTKLRINQTALLDL 261
           T +  PLR   E+ G RE+V  +R+N   LLDL
Sbjct: 96  TLASLPLRWSLERFGMRESVAGVRVNNPGLLDL 128


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,667,045
Number of Sequences: 37544
Number of extensions: 276242
Number of successful extensions: 630
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)