Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6l07
         (721 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    29   4.4  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    29   4.4  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    29   4.4  
Z70687-3|CAM35839.1|  332|Caenorhabditis elegans Hypothetical pr...    28   7.7  
U28943-2|AAA68357.1|  613|Caenorhabditis elegans Hypothetical pr...    28   7.7  

>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 8    HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
            +I+ PT+      +    +GN I  I +A+ +P   D  G FV  +  +I++
Sbjct: 4070 YILVPTSETATKALPTDESGNVIYPITKADGTPLATDSTGTFVTDDGQIIEK 4121


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 8    HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
            +I+ PT+      +    +GN I  I +A+ +P   D  G FV  +  +I++
Sbjct: 4115 YILVPTSETATKALPTDESGNVIYPITKADGTPLATDSTGTFVTDDGQIIEK 4166


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 28.7 bits (61), Expect = 4.4
 Identities = 14/52 (26%), Positives = 26/52 (50%)
 Frame = +2

Query: 8    HIMKPTAADIISRVTGGRTGNNIVDIIQANNSPTEGDQLGQFVNRNRSLIKE 163
            +I+ PT+      +    +GN I  I +A+ +P   D  G FV  +  +I++
Sbjct: 4115 YILVPTSETATKALPTDESGNVIYPITKADGTPLATDSTGTFVTDDGQIIEK 4166


>Z70687-3|CAM35839.1|  332|Caenorhabditis elegans Hypothetical
           protein T14C1.3 protein.
          Length = 332

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 8/41 (19%), Positives = 22/41 (53%)
 Frame = +2

Query: 494 RSCIWQRFQCRLFNKIKFICLVHADGISVGVTVFKRFDEYF 616
           + CI+    C  FN+++ +C++  + +  G  ++ + +  F
Sbjct: 29  QKCIFSNLNCTDFNRLRRVCVLFKEYVDAGEPMYDKIEIEF 69


>U28943-2|AAA68357.1|  613|Caenorhabditis elegans Hypothetical
           protein E04F6.5a protein.
          Length = 613

 Score = 27.9 bits (59), Expect = 7.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 38  ISRVTGGRTGNNIVDIIQAN 97
           +SRVTGG TG+N   ++ A+
Sbjct: 467 VSRVTGGNTGSNFGQVVDAS 486


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,592,917
Number of Sequences: 27780
Number of extensions: 241239
Number of successful extensions: 689
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 617
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 689
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1687292480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)