Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6k19
(656 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein T... 27 1.8
SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6 |Schizosacc... 27 2.4
SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||... 26 4.2
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac... 26 4.2
SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces pomb... 26 5.5
SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein ... 25 7.3
SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomy... 25 7.3
SPAPB1E7.06c |eme1||Holliday junction resolvase subunit Eme1|Sch... 25 7.3
SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyce... 25 7.3
SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 9.6
SPBC32C12.02 |ste11|aff1, stex|transcription factor Ste11|Schizo... 25 9.6
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 25 9.6
>SPBC29A3.14c |trt1||telomerase reverse transcriptase 1 protein Trt1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 988
Score = 27.5 bits (58), Expect = 1.8
Identities = 20/80 (25%), Positives = 35/80 (43%)
Frame = +3
Query: 318 KVKIADNNLVTHKELALKVSSIIGTRVYVFDPSCYFSTPPFDTVLYDNIRTVLKDNKTAL 497
K K+ D V K + +S T+ +V + YF PF+ V+ +K + T
Sbjct: 608 KKKLKDPEFVIRKYATIHATSDRATKNFVSEAFSYFDMVPFEKVVQ---LLSMKTSDTLF 664
Query: 498 LSASIQASLPSSEIYRQLAD 557
+ + SSEI++ L +
Sbjct: 665 VDFVDYWTKSSSEIFKMLKE 684
>SPAC23H3.06 |apl6||AP-3 adaptor complex subunit Apl6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 745
Score = 27.1 bits (57), Expect = 2.4
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +3
Query: 417 CYFSTPPFDTVLYDNIRTVLKDNKTALLSASI 512
CY P + + L ++I+T+L DN ++ A++
Sbjct: 168 CYSLDPSYKSQLEEHIKTLLSDNSPIVVPAAL 199
>SPCC364.01 |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 320
Score = 26.2 bits (55), Expect = 4.2
Identities = 14/43 (32%), Positives = 21/43 (48%)
Frame = +3
Query: 465 RTVLKDNKTALLSASIQASLPSSEIYRQLADSRHVSSDSFGVY 593
R +LKD LS S+ SLPS Q++ + +S + Y
Sbjct: 57 RKILKDVSLKRLSKSLDRSLPSENTIDQISFNHAMSEEDASGY 99
>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
Length = 155
Score = 26.2 bits (55), Expect = 4.2
Identities = 11/26 (42%), Positives = 17/26 (65%)
Frame = +3
Query: 207 KLRALLVVIPRILRSPPPTHPLIEDV 284
KLR++L I ++LR P P PL+ +
Sbjct: 105 KLRSVLEQILQLLREPNPDDPLVASI 130
>SPCC285.16c |msh6||MutS protein homolog|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1254
Score = 25.8 bits (54), Expect = 5.5
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -2
Query: 583 KESEETWRESANWR*ISEEG 524
KE E W + NW+ SEEG
Sbjct: 809 KEELEAWTRAFNWQKASEEG 828
>SPAC22A12.08c |||cardiolipin synthase/ hydrolase fusion protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 570
Score = 25.4 bits (53), Expect = 7.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = -1
Query: 536 LGGRERSLNRCREKSSFVVLKNRPDVVVQYG 444
LGG++ S+ EK F + N DV+ + G
Sbjct: 124 LGGKDNSVRETAEKYGFKSVINELDVIAKLG 154
>SPAC57A7.07c |||homocysteine methyltransferase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/27 (48%), Positives = 14/27 (51%)
Frame = +3
Query: 342 LVTHKELALKVSSIIGTRVYVFDPSCY 422
+V H E LKV II T Y D S Y
Sbjct: 37 VVKHHEEFLKVCDIISTFTYQLDASIY 63
>SPAPB1E7.06c |eme1||Holliday junction resolvase subunit
Eme1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 738
Score = 25.4 bits (53), Expect = 7.3
Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +2
Query: 17 FHTPTTPDLTSISINPLTP-Y*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSPPYFQV 193
FHTPT P T +S +P + + PLS +A S LT S L + SPP V
Sbjct: 139 FHTPTIPRTTQLSSKTSSPIVIPDDNEQVASPLSKKAAS--LTSSPLKDFQS-SPPLSTV 195
Query: 194 NDESQA 211
+S +
Sbjct: 196 LQKSHS 201
>SPBC8D2.02c |||vacuolar sorting protein Vps68|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 170
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/25 (52%), Positives = 15/25 (60%)
Frame = +3
Query: 519 SLPSSEIYRQLADSRHVSSDSFGVY 593
+L S I+R S HVSS S GVY
Sbjct: 2 TLLDSSIFRFRLSSLHVSSRSLGVY 26
>SPBC26H8.04c |||DEP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1496
Score = 25.0 bits (52), Expect = 9.6
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +2
Query: 104 PPLSSEAPSAYLTPSSLGMAKGVSP 178
PP++++ P +L P+S AK V P
Sbjct: 723 PPIATKKPPTFLKPNSPEYAKTVIP 747
>SPBC32C12.02 |ste11|aff1, stex|transcription factor
Ste11|Schizosaccharomyces pombe|chr 2|||Manual
Length = 468
Score = 25.0 bits (52), Expect = 9.6
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 5/43 (11%)
Frame = +2
Query: 26 PTTPDLTSISINPLTP-----Y*KEFAPGLKPPLSSEAPSAYL 139
P+TP + SI+P TP Y + A L PLS + +AYL
Sbjct: 303 PSTPSCPNASISPKTPNTGDHYGFDGAEYLGTPLSVGSTTAYL 345
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 25.0 bits (52), Expect = 9.6
Identities = 13/27 (48%), Positives = 15/27 (55%)
Frame = -1
Query: 536 LGGRERSLNRCREKSSFVVLKNRPDVV 456
LG RS RC KSSF+ + DVV
Sbjct: 39 LGRNGRSSKRCSPKSSFIRNSPKIDVV 65
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,631,062
Number of Sequences: 5004
Number of extensions: 51554
Number of successful extensions: 167
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 167
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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