Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6k19
         (656 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-884|AAF52222.1|  299|Drosophila melanogaster CG14035-PA...    31   1.4  
AY119125-1|AAM50985.1|  553|Drosophila melanogaster RE28286p pro...    29   5.6  
AE014298-1861|AAF48238.3|  625|Drosophila melanogaster CG12723-P...    29   5.6  
AE014296-3425|AAF51645.2|  926|Drosophila melanogaster CG3680-PA...    29   7.3  

>AE014134-884|AAF52222.1|  299|Drosophila melanogaster CG14035-PA
           protein.
          Length = 299

 Score = 31.1 bits (67), Expect = 1.4
 Identities = 16/55 (29%), Positives = 27/55 (49%), Gaps = 1/55 (1%)
 Frame = +2

Query: 8   NPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAY-LTPSSLGMAKG 169
           NPR H P +P  +S    P +P+    AP   P +S   P  + ++P+ +   +G
Sbjct: 17  NPRAHNPASPSPSSFLYRPPSPW--TTAPSPPPIISGPRPYGHAMSPAPINQVRG 69


>AY119125-1|AAM50985.1|  553|Drosophila melanogaster RE28286p
           protein.
          Length = 553

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = +2

Query: 5   SNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGM 160
           S P    P +P+  SI++ P  PY    A G  PP+ S+ PSA L+ SS G+
Sbjct: 458 SPPTESAPASPNRPSITLLP--PYGSAPAEGYLPPVGSQ-PSA-LSASSAGI 505


>AE014298-1861|AAF48238.3|  625|Drosophila melanogaster CG12723-PA
           protein.
          Length = 625

 Score = 29.1 bits (62), Expect = 5.6
 Identities = 21/52 (40%), Positives = 29/52 (55%)
 Frame = +2

Query: 5   SNPRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGM 160
           S P    P +P+  SI++ P  PY    A G  PP+ S+ PSA L+ SS G+
Sbjct: 530 SPPTESAPASPNRPSITLLP--PYGSAPAEGYLPPVGSQ-PSA-LSASSAGI 577


>AE014296-3425|AAF51645.2|  926|Drosophila melanogaster CG3680-PA
           protein.
          Length = 926

 Score = 28.7 bits (61), Expect = 7.3
 Identities = 19/51 (37%), Positives = 24/51 (47%)
 Frame = +2

Query: 26  PTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAPSAYLTPSSLGMAKGVSP 178
           PTTP  T  SI+P T   KE AP  +    +   +   TP   G  +G SP
Sbjct: 413 PTTPKTTVKSISPTTTTKKEVAPKKRSATPTARSTKAGTPVG-GTERGPSP 462


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 29,332,893
Number of Sequences: 53049
Number of extensions: 605786
Number of successful extensions: 1763
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 1696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1763
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2806815600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)