Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6k19
         (656 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical pr...    28   5.1  
U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical...    28   6.7  
AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical...    28   6.7  
Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical p...    27   8.9  
U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase ...    27   8.9  
U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase ...    27   8.9  

>U80448-6|AAO12417.1|  687|Caenorhabditis elegans Hypothetical
           protein F59A3.2b protein.
          Length = 687

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +2

Query: 11  PRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SAYLTPSSLGMAKGVSPPYF 187
           PR     TP L  + I+P+     +F P + PP    +P  A   P++L      S P  
Sbjct: 525 PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNPTNLYPTPPSSLPNT 584

Query: 188 QVNDESQASRLISR 229
            V ++      ++R
Sbjct: 585 YVPNQESFDESVNR 598


>U80448-5|AAB37819.1|  975|Caenorhabditis elegans Hypothetical
           protein F59A3.2a protein.
          Length = 975

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +2

Query: 11  PRFHTPTTPDLTSISINPLTPY*KEFAPGLKPPLSSEAP-SAYLTPSSLGMAKGVSPPYF 187
           PR     TP L  + I+P+     +F P + PP    +P  A   P++L      S P  
Sbjct: 525 PRVTLLPTPTLVFVPISPVKNLPSDFNPRIPPPQIYSSPGQALFNPTNLYPTPPSSLPNT 584

Query: 188 QVNDESQASRLISR 229
            V ++      ++R
Sbjct: 585 YVPNQESFDESVNR 598


>AL117195-31|CAN99709.1| 1459|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18b protein.
          Length = 1459

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 107  PLSSEAPSAYLTPSSLGMAKGVSPP 181
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>AL117195-30|CAB60772.3| 1456|Caenorhabditis elegans Hypothetical
            protein Y57A10A.18a protein.
          Length = 1456

 Score = 27.9 bits (59), Expect = 6.7
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +2

Query: 107  PLSSEAPSAYLTPSSLGMAKGVSPP 181
            P+++EAP+A   PS   + +G SPP
Sbjct: 1203 PVAAEAPAAAAAPSRARVPRGPSPP 1227


>Z81593-10|CAI94504.1|  349|Caenorhabditis elegans Hypothetical
           protein T20B3.15 protein.
          Length = 349

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 22/73 (30%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = +3

Query: 402 VFDPSCYFSTPPFDTVLYDNIRTVLKDNKTALLSASIQASLPSSEIYRQLADSRHV-SSD 578
           ++D +C F+   +  + YD I T  +      LS S  AS+ S    R L  +  V S  
Sbjct: 235 IYDETCVFNYDNYCYIPYDQINTSKQGQSICELSGSNLASIRSGNENRFLMSTVSVFSIF 294

Query: 579 SFGVYVKS*SLIL 617
           + G +  S  LIL
Sbjct: 295 AIGGFAFSDDLIL 307


>U41032-4|AAO44918.2| 1130|Caenorhabditis elegans Protein kinase
           protein 25, isoformb protein.
          Length = 1130

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 125 EPLMTTEALTPARIPSNTAS 66
           EP++++E L P R+PS T S
Sbjct: 877 EPILSSEVLQPTRLPSATTS 896


>U41032-3|AAO44917.1| 1237|Caenorhabditis elegans Protein kinase
            protein 25, isoforma protein.
          Length = 1237

 Score = 27.5 bits (58), Expect = 8.9
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = -1

Query: 125  EPLMTTEALTPARIPSNTAS 66
            EP++++E L P R+PS T S
Sbjct: 984  EPILSSEVLQPTRLPSATTS 1003


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,534,240
Number of Sequences: 27780
Number of extensions: 290229
Number of successful extensions: 929
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 902
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 929
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1465835342
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)