Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6k16
         (682 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory recept...    26   0.25 
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    21   9.3  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    21   9.3  

>AM292341-1|CAL23153.2|  393|Tribolium castaneum gustatory receptor
           candidate 20 protein.
          Length = 393

 Score = 26.2 bits (55), Expect = 0.25
 Identities = 17/39 (43%), Positives = 22/39 (56%), Gaps = 2/39 (5%)
 Frame = -2

Query: 306 FLPCMAKYGWQQICLNFSISHNTCCICCNRLS--VFSLS 196
           FLP  +    Q+ CLN SI++   CIC    S  +FSLS
Sbjct: 27  FLPVCSSQKGQKTCLNLSINY---CICGYIFSAILFSLS 62


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/14 (50%), Positives = 11/14 (78%)
 Frame = +2

Query: 68  ISFNIPKHTVEYVH 109
           I++++PK   EYVH
Sbjct: 482 INYDLPKSIDEYVH 495


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 9/24 (37%), Positives = 11/24 (45%)
 Frame = -3

Query: 233 AFAAIGLACFRFHALPQLSYTPLP 162
           A    G  C  +  LPQ+   PLP
Sbjct: 163 ALPPTGFLCNNYPPLPQVPPLPLP 186


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 155,160
Number of Sequences: 336
Number of extensions: 3325
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17801955
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)