Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6k16
(682 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 94 1e-20
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce... 89 4e-19
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|... 78 1e-15
SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po... 77 2e-15
SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyc... 73 4e-14
SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase Snf22... 73 5e-14
SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase Rdh54... 71 2e-13
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo... 67 2e-12
SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3 |Sch... 67 3e-12
SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase Hrp1|Schizosac... 64 2e-11
SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomy... 63 4e-11
SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharo... 62 1e-10
SPAC25A8.01c ||snf2SR|fun thirty related protein Fft3|Schizosacc... 58 1e-09
SPBC1826.01c |mot1||TATA-binding protein associated factor Mot1|... 55 1e-08
SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharo... 54 1e-08
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha... 52 6e-08
SPCC1235.05c |fft2||fun thirty related protein Fft2|Schizosaccha... 52 6e-08
SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo... 50 4e-07
SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog Rhp16|Schizo... 48 1e-06
SPAC25B8.02 |||histone deacetylase complex subunit Sds3 |Schizos... 29 0.82
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B... 27 2.5
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 27 2.5
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po... 27 3.3
SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces pom... 27 3.3
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa... 26 4.4
SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase |S... 26 4.4
SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein Zds1|Sch... 26 4.4
SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3 |Schiz... 26 5.8
SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr... 26 5.8
SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomy... 25 7.7
SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy... 25 7.7
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 94.3 bits (224), Expect = 1e-20
Identities = 49/113 (43%), Positives = 71/113 (62%), Gaps = 1/113 (0%)
Frame = +2
Query: 347 SSKCKRVLDLVDDILNTSD-DKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRI 523
S+K ++ L+ V +I+ DKI++ SQ+V +L++F F+Q+ I LMYTG L +R
Sbjct: 864 STKIEKALNAVKEIIKKQPTDKILIFSQFVSFLELFTVPFRQEGIKYLMYTGGLSTAERN 923
Query: 524 LAETTFNNAADTQHRILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQAQD 682
A F D R+LL+S+K G VGLNL NH+++L+P WNP IE QA D
Sbjct: 924 QALINFE--VDPNVRVLLISLKAGNVGLNLTCANHVIILDPFWNPYIEEQAVD 974
Score = 40.3 bits (90), Expect = 3e-04
Identities = 27/111 (24%), Positives = 53/111 (47%), Gaps = 5/111 (4%)
Frame = +2
Query: 17 RIKSIIKKIVLKRDKS-----EISFNIPKHTVEYVHVNFNEEEKTLYDKLKCESEEAYMK 181
R + ++K ++L+R K+ + +P T + + E Y+ L+ ++ K
Sbjct: 616 RFRGLLKAVLLRRTKNTKIDGKPILTLPPKTAVKSETDLSSSEMEFYNTLQSGAQIQMRK 675
Query: 182 AVAARESENTLSRLQQMQHVLWLILKLRQICCHPYLAMHGRNLLETNDCFK 334
+ E T++ +L L+L+LRQ CCHP+L + ++ ND F+
Sbjct: 676 YL----QEGTITT--HYGSLLVLLLRLRQACCHPWLIVAREAAVDDNDSFQ 720
>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1418
Score = 89.4 bits (212), Expect = 4e-19
Identities = 62/229 (27%), Positives = 116/229 (50%), Gaps = 5/229 (2%)
Frame = +2
Query: 5 DSTNRIKSIIKKIVLKRDKSEISFNIPKHTVEYVHVNFNEEEKTLYDKLKCESEEAYMKA 184
+ + I+K L+R KSE+ N P + ++ +K LY + ++
Sbjct: 755 EKVTELHQILKPFFLRRVKSEVLDNFPTKVEVIIPLSMTPVQKGLYKSILSKNLSLLRNI 814
Query: 185 VA-ARESENTLSRLQQMQHVLWLILKLRQICCHPYLAMHGRNLLETNDCFKMDYMS---S 352
A S + R + ++L ++LR+ HPY+ + ++ + N +++ S +
Sbjct: 815 TGYANTSSSGGQRTTSLNNIL---MQLRKTLAHPYI--YSPDIEDRNLPYELAMRSLEEA 869
Query: 353 KCK-RVLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILA 529
CK +L L+ L T +I+L SQ+++ L I E++F+ KNIA + G +R A
Sbjct: 870 SCKFLILRLLVPKLITRGHRILLFSQFIQQLDILEDWFEYKNIAYARFDGASSEMERQSA 929
Query: 530 ETTFNNAADTQHRILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQA 676
+FN A +++ LLS + GGVG+NL + +++L+P +NP ++QA
Sbjct: 930 IDSFN-APNSELSCFLLSTRAGGVGINLASADTVIILDPDFNPHQDMQA 977
>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
Snf21|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1199
Score = 77.8 bits (183), Expect = 1e-15
Identities = 52/223 (23%), Positives = 106/223 (47%), Gaps = 1/223 (0%)
Frame = +2
Query: 17 RIKSIIKKIVLKRDKSEISFNIPKHTVEYVHVNFNEEEKTLYDKLKCESEEAYMKAVAAR 196
R+ +++ +L+R K ++ +P + + + ++ LY ++K + + A+
Sbjct: 632 RLHKVLRPFLLRRLKKDVEAELPDKVEKVIRCQMSGLQQKLYYQMK---KHGMLYVEDAK 688
Query: 197 ESENTLSRLQQMQHVLWLILKLRQICCHPYLAMH-GRNLLETNDCFKMDYMSSKCKRVLD 373
+ + LQ +++L++IC HP++ R++ T + M + S +LD
Sbjct: 689 RGKTGIKGLQNT------VMQLKKICNHPFVFEDVERSIDPTGFNYDMLWRVSGKFELLD 742
Query: 374 LVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAA 553
+ L S +I++ Q + + I E++ + L G K +DR FN+
Sbjct: 743 RILPKLFRSGHRILMFFQMTQIMNIMEDYLHYRQWRYLRLDGSTKADDRSKLLGVFNDPT 802
Query: 554 DTQHRILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQAQD 682
+ + LLS + GG+GLNL + +++ + WNP +LQAQD
Sbjct: 803 -AEVNLFLLSTRAGGLGLNLQTADTVIIFDSDWNPHQDLQAQD 844
>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 897
Score = 77.0 bits (181), Expect = 2e-15
Identities = 41/113 (36%), Positives = 66/113 (58%), Gaps = 1/113 (0%)
Frame = +2
Query: 347 SSKCKRVLDLVDDILNTS-DDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRI 523
SSK + + DI+ + ++KI++ SQ+ +YL + + K +NI + Y G + R
Sbjct: 722 SSKLNQARQTILDIIGSKRNEKILVYSQFSQYLCLVSHMLKLENIRHVRYDGTMSANQRQ 781
Query: 524 LAETTFNNAADTQHRILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQAQD 682
+ +FNN D ++L+S+K G VGLNL NH+++ EP +NP IE QA D
Sbjct: 782 KSLHSFNNDKDVL--VMLVSLKAGSVGLNLTIANHVILQEPFYNPSIEDQAID 832
Score = 39.1 bits (87), Expect = 6e-04
Identities = 23/71 (32%), Positives = 37/71 (52%)
Frame = +2
Query: 77 NIPKHTVEYVHVNFNEEEKTLYDKLKCESEEAYMKAVAARESENTLSRLQQMQHVLWLIL 256
N+P T+ V VN EE+ LY++ ++ +++ LSR +L +L
Sbjct: 501 NLPPKTIRTVSVNLLPEERALYNEQMSSAQSLVDNYF---NNDHDLSRYG---FLLVSLL 554
Query: 257 KLRQICCHPYL 289
+LRQ CCHP+L
Sbjct: 555 RLRQFCCHPWL 565
>SPAC15A10.03c |rhp54|rad54|Rad54 homolog Rhp54|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 852
Score = 72.9 bits (171), Expect = 4e-14
Identities = 37/111 (33%), Positives = 58/111 (52%)
Frame = +2
Query: 344 MSSKCKRVLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRI 523
+S K + ++ I +DDKI+L+S + L +FE + + L G + V R
Sbjct: 608 LSGKMLVLERMLYQIKQETDDKIVLISNYTSTLDLFEQLCRARGYKALRLDGTMNVNKRQ 667
Query: 524 LAETTFNNAADTQHRILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQA 676
TFN+ + + LLS K GG G+NLIG N +++ +P WNP + QA
Sbjct: 668 RLVDTFNDP-EKDAFVFLLSSKAGGCGINLIGANRLILFDPDWNPAADQQA 717
>SPCC1620.14c |snf22|SPCC830.01c|ATP-dependent DNA helicase
Snf22|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1680
Score = 72.5 bits (170), Expect = 5e-14
Identities = 49/223 (21%), Positives = 103/223 (46%), Gaps = 1/223 (0%)
Frame = +2
Query: 17 RIKSIIKKIVLKRDKSEISFNIPKHTVEYVHVNFNEEEKTLYDKLKCESEEAYMKAVAAR 196
R+ +++ + +R K ++ +P + + + + LY ++K M V
Sbjct: 1084 RLHKVLRPFLFRRLKKDVEKELPDKVEKVIKCPLSGLQLKLYQQMKKHG----MLFVDGE 1139
Query: 197 ESENTLSRLQQMQHVLWLILKLRQICCHPYLAMHGRNLLETNDC-FKMDYMSSKCKRVLD 373
+ + + LQ +++L++IC HP++ ++ + + + ++ +LD
Sbjct: 1140 KGKTGIKGLQNT------VMQLKKICNHPFIFEDVERAIDPSGTNVDLLWRAAGKFELLD 1193
Query: 374 LVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAA 553
+ L + K ++ Q + + I E++ + KN L G K +DR FN+
Sbjct: 1194 RILPKLFLTGHKTLMFFQMTQIMTIMEDYLRSKNWKYLRLDGSTKSDDRCSLLAQFNDPK 1253
Query: 554 DTQHRILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQAQD 682
+ I +LS + GG+GLNL + +++ + WNP +LQAQD
Sbjct: 1254 SDVY-IFMLSTRAGGLGLNLQTADTVIIFDTDWNPHQDLQAQD 1295
>SPAC22F3.03c |rdh54|tid1, mug34|ATP-dependent DNA helicase
Rdh54|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 70.9 bits (166), Expect = 2e-13
Identities = 48/161 (29%), Positives = 77/161 (47%), Gaps = 7/161 (4%)
Frame = +2
Query: 215 SRLQQMQHVLWLILKLRQICCHPYLAMHGR-NLLETN----DCFKMDYM--SSKCKRVLD 373
S + Q + L ++ +L +IC L + + N L T F+ + M SS ++L
Sbjct: 479 SSVDQKGYYLKILTRLSKICNSTILLRNEKENFLSTELQDKHVFEQENMLLSSSKLQILA 538
Query: 374 LVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAA 553
+ K ++VSQ+ E L++ E F ++ G +R L FN ++
Sbjct: 539 ALLKSFQRGCQKAVIVSQYKETLELIELFLSILHVRFCKLLGSTPFSERDLIVHNFNTSS 598
Query: 554 DTQHRILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQA 676
+ +LLLS K GG GLNL G +++ EP WNP +LQA
Sbjct: 599 FKEFSVLLLSSKAGGCGLNLTGSTRLIIYEPSWNPAQDLQA 639
>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
Swr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1288
Score = 67.3 bits (157), Expect = 2e-12
Identities = 34/107 (31%), Positives = 58/107 (54%)
Frame = +2
Query: 362 RVLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTF 541
+VLD + L ++ ++++ +Q + L I E F L G K+E R + F
Sbjct: 994 QVLDRLLKDLVSNGHRVLIFTQMTKVLDILEQFLNIHGHRYLRLDGATKIEQRQILTERF 1053
Query: 542 NNAADTQHRILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQAQD 682
NN D + + +LS + GG+G+NL G + ++ + WNPQ++ QAQD
Sbjct: 1054 NN--DDKIPVFILSTRSGGLGINLTGADTVIFYDSDWNPQLDAQAQD 1098
Score = 28.3 bits (60), Expect = 1.1
Identities = 20/91 (21%), Positives = 45/91 (49%)
Frame = +2
Query: 17 RIKSIIKKIVLKRDKSEISFNIPKHTVEYVHVNFNEEEKTLYDKLKCESEEAYMKAVAAR 196
++ +++ +L+R K+E+ +P V+ ++ ++ LYD A + + A
Sbjct: 667 KLHRVLRPYLLRRLKTEVEKQMPAKYEHVVYCQLSKRQRFLYDDF---INRARTREILA- 722
Query: 197 ESENTLSRLQQMQHVLWLILKLRQICCHPYL 289
S N +S ++ +++LR++C HP L
Sbjct: 723 -SGNFMS-------IINCLMQLRKVCNHPNL 745
>SPAC13G6.01c |rad8|SPAC5H10.14c|ubiquitin-protein ligase E3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1133
Score = 66.9 bits (156), Expect = 3e-12
Identities = 34/113 (30%), Positives = 63/113 (55%), Gaps = 1/113 (0%)
Frame = +2
Query: 347 SSKCKRVLDLVDDILNTSD-DKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRI 523
S K +L + + ++S+ +K+++ SQ+ +L I + + + + + G + + R
Sbjct: 962 SVKLNGLLGQLRQLTHSSEPEKVVIFSQFTTFLDIIADVLESEKMGYARFDGTMSQQMRS 1021
Query: 524 LAETTFNNAADTQHRILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQAQD 682
A TF N D +L++S+K GGVGLNL NH+ +++P W+ +E QA D
Sbjct: 1022 TALETFRNDPDVN--VLIISLKAGGVGLNLTCANHVFIMDPWWSWSVEAQAID 1072
Score = 46.8 bits (106), Expect = 3e-06
Identities = 34/113 (30%), Positives = 58/113 (51%), Gaps = 6/113 (5%)
Frame = +2
Query: 14 NRIKSIIKKIVLKRDKSEISFN------IPKHTVEYVHVNFNEEEKTLYDKLKCESEEAY 175
N ++SI++ +VL+R K N +P TV+ +++F++ E+ +YD L +++
Sbjct: 731 NVVQSILEFLVLRRTKETKDRNGNSIVTLPPKTVKIEYLDFSDSERKIYDSLYTKAKSTV 790
Query: 176 MKAVAARESENTLSRLQQMQHVLWLILKLRQICCHPYLAMHGRNLLETNDCFK 334
+ A TL R +L L+L+LRQ CC P L + ET D F+
Sbjct: 791 NANIVA----GTLFR--NYTTILGLLLRLRQACCDPVLLSNMTINSETFDDFE 837
>SPAC1783.05 |hrp1|chd1|ATP-dependent DNA helicase
Hrp1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1373
Score = 64.1 bits (149), Expect = 2e-11
Identities = 50/222 (22%), Positives = 99/222 (44%), Gaps = 7/222 (3%)
Frame = +2
Query: 32 IKKIVLKRDKSEISFNIPKHTVEYVHVNFNEEEKTLYDKLKCESEEAYMKAVAARESENT 211
++ +L+R K ++ ++P + + V ++ + Y + ++ Y +
Sbjct: 601 LQPFILRRLKKDVEKSLPSKSERILRVELSDMQTEWYKNILTKN---YRALTGHTDGRGQ 657
Query: 212 LSRLQQMQHVLWLILKLRQICCHPYLA-------MHGRNLLETNDCFKMDYMSSKCKRVL 370
LS L ++++L+++ HPYL M GR + D + M+S +L
Sbjct: 658 LSLLN-------IVVELKKVSNHPYLFPGAAEKWMMGRKMTR-EDTLRGIIMNSGKMVLL 709
Query: 371 DLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNA 550
D + L ++++ SQ V L I + + G + R ++ FN A
Sbjct: 710 DKLLQRLKHDGHRVLIFSQMVRMLNILGEYMSLRGYNYQRLDGTIPASVRRVSIDHFN-A 768
Query: 551 ADTQHRILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQA 676
D+ + LLS + GG+G+NL + +++ + WNPQ +LQA
Sbjct: 769 PDSPDFVFLLSTRAGGLGINLNTADTVIIFDSDWNPQADLQA 810
>SPCP25A2.02c |rhp26||SNF2 family helicase Rhp26|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 973
Score = 62.9 bits (146), Expect = 4e-11
Identities = 55/222 (24%), Positives = 100/222 (45%), Gaps = 1/222 (0%)
Frame = +2
Query: 20 IKSIIKKIVLKRDKSEISFNIPKHTVEYVHVNFNEEEKTLYDKLKCESEEAYMKAVAARE 199
++ +I +L+R K +++ ++PK + E+ L+ KL +AY + +
Sbjct: 529 LRDLISPYLLRRMKLDVAADLPK-----------KSEQVLFCKLTPLQRKAYQDFLQGSD 577
Query: 200 SENTLSRLQQMQHVLWLILKLRQICCHPYLAMHGRNLLETNDCFKMDYMSSKCKRVLDLV 379
+ L+ +QM L+ I LR+IC HP L LL D D S +V+ +
Sbjct: 578 MQKILNGKRQM---LYGIDILRKICNHPDLVTR-EYLLHKEDYNYGDPEKSGKLKVIRAL 633
Query: 380 DDILNTSDDKIILVSQWVEYLKIFENFFKQ-KNIATLMYTGQLKVEDRILAETTFNNAAD 556
+ + +L SQ + L I E K ++ G + R FN +
Sbjct: 634 LTLWKKQGHRTLLFSQTRQMLDILEIGLKDLPDVHYCRMDGSTSIALRQDLVDNFNK--N 691
Query: 557 TQHRILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQAQD 682
+ LL+ + GG+G+NL G + +++ +P WNP + QA++
Sbjct: 692 EYFDVFLLTTRVGGLGVNLTGADRVILFDPDWNPSTDAQARE 733
>SPBC582.10c |||ATP-dependent DNA helicase Rhp16b |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 830
Score = 61.7 bits (143), Expect = 1e-10
Identities = 40/133 (30%), Positives = 67/133 (50%), Gaps = 6/133 (4%)
Frame = +2
Query: 302 RNLLETNDCFKMDYMSSKCKRVLDLVDDILNTSDD------KIILVSQWVEYLKIFENFF 463
+ + + ND K Y SSK + +L ++ DD K I+ SQ+ +L I +
Sbjct: 633 KGIQDPND--KTLYKSSKIREILKILSLDEQEEDDTVRGLRKTIIFSQFTTFLDIIDLHL 690
Query: 464 KQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSIKCGGVGLNLIGGNHIVMLE 643
++ I + Y G++ R + + + TQ +LL S+KCG +GLNL + +++ +
Sbjct: 691 RKAGIGFVRYDGRMNNRAREKSLDLLRSDSGTQ--VLLCSLKCGALGLNLTCASRVILCD 748
Query: 644 PHWNPQIELQAQD 682
WNP IE QA D
Sbjct: 749 VWWNPAIEEQAID 761
Score = 30.7 bits (66), Expect = 0.20
Identities = 27/98 (27%), Positives = 46/98 (46%), Gaps = 9/98 (9%)
Frame = +2
Query: 17 RIKSIIKKIVLKRDKSEISFNIPKHTVEYVHVNFNEEEKTLYDKLKCESEEAYMKAVA-- 190
R++ ++ I+L+R K+ + N K + K L K+ C+ EE+ +
Sbjct: 460 RLRMLLSVIMLRRTKTLLEANAGKDGTG----GALKLSKRLVYKVICKFEESERDFYSNL 515
Query: 191 ARESENTLSRL-------QQMQHVLWLILKLRQICCHP 283
AR E T+S + ++L L+L+LRQ C HP
Sbjct: 516 ARNMERTMSNFVNSGKLGKNYTNILCLLLRLRQACNHP 553
>SPAC25A8.01c ||snf2SR|fun thirty related protein
Fft3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 922
Score = 58.0 bits (134), Expect = 1e-09
Identities = 44/159 (27%), Positives = 78/159 (49%)
Frame = +2
Query: 206 NTLSRLQQMQHVLWLILKLRQICCHPYLAMHGRNLLETNDCFKMDYMSSKCKRVLDLVDD 385
N L + MQ++ ++L +CC N + D MD ++K +++ L+ +
Sbjct: 721 NELYIFEDMQYMS--DIELHNLCCK----FPSINSFQLKDEPWMD--ATKVRKLKKLLTN 772
Query: 386 ILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQH 565
+ D +++L SQ+ + L I + K N+ L + G +V+ R F AD
Sbjct: 773 AVENGD-RVVLFSQFTQVLDILQLVMKSLNLKFLRFDGSTQVDFRQDLIDQFY--ADESI 829
Query: 566 RILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQAQD 682
+ LLS K GG G+NL N +++ + +NP +LQA+D
Sbjct: 830 NVFLLSTKAGGFGINLACANMVILYDVSFNPFDDLQAED 868
Score = 37.9 bits (84), Expect = 0.001
Identities = 24/94 (25%), Positives = 49/94 (52%), Gaps = 2/94 (2%)
Frame = +2
Query: 14 NRIKSIIKKIVLKRDKSEISFNIPKHTVEYVHVNFNEEEKTLYDKLKC-ESEEAYMKAVA 190
+R K ++ VL+R KS++ +PK T F+EEE+ YD +S + +
Sbjct: 601 SRAKMMMAPFVLRRKKSQVLDALPKKTRIIEFCEFSEEERRRYDDFASKQSVNSLLDENV 660
Query: 191 ARESENTLSRLQQMQHVL-WLILKLRQICCHPYL 289
+ + +T + L + + +++++LR++ HP L
Sbjct: 661 MKTNLDTNANLAKKKSTAGFVLVQLRKLADHPML 694
>SPBC1826.01c |mot1||TATA-binding protein associated factor
Mot1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1953
Score = 54.8 bits (126), Expect = 1e-08
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 3/98 (3%)
Frame = +2
Query: 398 SDDKIILVSQWVEYLKIFENFFKQKNIATLMYT---GQLKVEDRILAETTFNNAADTQHR 568
S+ ++++ Q + L + E Q + + Y G ++ R A T FNN D
Sbjct: 1735 SEHRVLIFCQLKDMLDMVEKDLLQATMPDVTYMRLDGSVEPTKRQEAVTKFNN--DPSID 1792
Query: 569 ILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQAQD 682
+LLL+ GG+GLNL G + ++ +E WNP +LQA D
Sbjct: 1793 VLLLTTHVGGLGLNLTGADTVIFVEHDWNPMRDLQAMD 1830
Score = 29.9 bits (64), Expect = 0.36
Identities = 15/85 (17%), Positives = 42/85 (49%), Gaps = 1/85 (1%)
Frame = +2
Query: 44 VLKRDKSEISFNIPKHTVEYVHVNFNE-EEKTLYDKLKCESEEAYMKAVAARESENTLSR 220
+L+R K ++ ++P ++ + + ++ + K L D + + ++ +++ T +
Sbjct: 1590 MLRRLKEDVLADLPPKIIQDYYCDMSDLQRKLLNDFVSQLNINEELEDDETEKTQGTRKK 1649
Query: 221 LQQMQHVLWLILKLRQICCHPYLAM 295
Q H+ + +R++C HP L +
Sbjct: 1650 KSQKAHIFQALQYMRKLCNHPALIL 1674
>SPAC3G6.01 |hrp3||ATP-dependent DNA helicase Hrp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1388
Score = 54.4 bits (125), Expect = 1e-08
Identities = 44/223 (19%), Positives = 101/223 (45%), Gaps = 8/223 (3%)
Frame = +2
Query: 32 IKKIVLKRDKSEISFNIPKHTVEYVHVNFNEEEKTLYDKLKCESEEAYMKAVAARESENT 211
++ +L+R K ++ ++P + + V ++ + Y + + +++++ +
Sbjct: 585 LQPYILRRLKKDVEKSLPSKSERILRVELSDLQMYWYKNILTRNYRVLTQSISSGSQISL 644
Query: 212 LSRLQQMQHVLWLILKLRQICCHPYL--AMHGRNLLETNDCFKMD------YMSSKCKRV 367
L+ ++++L++ HPYL + + + N + D M+S +
Sbjct: 645 LN----------IVVELKKASNHPYLFDGVEESWMQKINSQGRRDEVLKGLIMNSGKMVL 694
Query: 368 LDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNN 547
LD + L ++++ SQ V L I ++ + G + R + FN
Sbjct: 695 LDKLLSRLRRDGHRVLIFSQMVRMLDILGDYLSLRGYPHQRLDGTVPAAVRRTSIDHFN- 753
Query: 548 AADTQHRILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQA 676
A ++ + LLS + GG+G+NL+ + +++ + WNPQ +LQA
Sbjct: 754 APNSPDFVFLLSTRAGGLGINLMTADTVIIFDSDWNPQADLQA 796
>SPAC20G8.08c |fft1||fun thirty related protein
Fft1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 944
Score = 52.4 bits (120), Expect = 6e-08
Identities = 31/112 (27%), Positives = 59/112 (52%)
Frame = +2
Query: 347 SSKCKRVLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRIL 526
S+K K++ L+ + +++I++ SQ+ + L I E ++ L G VE R
Sbjct: 764 SAKVKKLCSLLKK--SRPNERILIFSQFTQVLDILEYVLNTLDLEFLRLDGSTPVETRQQ 821
Query: 527 AETTFNNAADTQHRILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQAQD 682
F+ + +++ LLS K GG G+NL N +++ + +NP ++QA+D
Sbjct: 822 LIDDFHT--NENYKVFLLSTKSGGFGINLTCANIVILFDCSFNPFDDMQAED 871
>SPCC1235.05c |fft2||fun thirty related protein
Fft2|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1284
Score = 52.4 bits (120), Expect = 6e-08
Identities = 35/114 (30%), Positives = 55/114 (48%)
Frame = +2
Query: 341 YMSSKCKRVLDLVDDILNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDR 520
+M S RVL + + +I+L SQ+ + L I E I+ + G +VE R
Sbjct: 920 WMDSGKIRVLKELLPKMKEEGSRILLFSQFTQMLDILEQVLDTLKISYVRLDGSTQVEVR 979
Query: 521 ILAETTFNNAADTQHRILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQAQD 682
F+ D + LLS K GG G+NL N +++ + +NP +LQA+D
Sbjct: 980 QDIIDQFHKEEDVT--VFLLSTKAGGFGINLACANVVILYDCSYNPFDDLQAED 1031
>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
Ino80|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1604
Score = 49.6 bits (113), Expect = 4e-07
Identities = 24/98 (24%), Positives = 45/98 (45%)
Frame = +2
Query: 389 LNTSDDKIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHR 568
L +D ++++ Q + + E + + L G K+ R T + +
Sbjct: 1441 LKANDHRVLIYFQMTRMIDLMEEYLTFRQYKYLRLDGSSKISQRRDMVTEWQTRPELF-- 1498
Query: 569 ILLLSIKCGGVGLNLIGGNHIVMLEPHWNPQIELQAQD 682
+ LLS + GG+G+NL + ++ + WNP I+ QA D
Sbjct: 1499 VFLLSTRAGGLGINLTAADTVIFYDSDWNPSIDSQAMD 1536
Score = 35.9 bits (79), Expect = 0.005
Identities = 20/91 (21%), Positives = 45/91 (49%)
Frame = +2
Query: 17 RIKSIIKKIVLKRDKSEISFNIPKHTVEYVHVNFNEEEKTLYDKLKCESEEAYMKAVAAR 196
R+ I+K +L+R K + + + + V+ + + +K LY L+ + A + A
Sbjct: 1059 RLHMILKPFMLRRVKKNVQSELGEKIEKEVYCDLTQRQKILYQALRRQISIAELLEKAIL 1118
Query: 197 ESENTLSRLQQMQHVLWLILKLRQICCHPYL 289
++T++ + L+++ R++C HP L
Sbjct: 1119 GGDDTVASIMN------LVMQFRKVCNHPDL 1143
>SPCC330.01c |rhp16|SPCC613.13c, rad16|Rad16 homolog
Rhp16|Schizosaccharomyces pombe|chr 3|||Manual
Length = 963
Score = 48.0 bits (109), Expect = 1e-06
Identities = 27/92 (29%), Positives = 44/92 (47%)
Frame = +2
Query: 407 KIILVSQWVEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRILLLSI 586
K I+ SQ+ L + ++ + G + + R F+N D I L+S+
Sbjct: 812 KSIVFSQFTSMLDLIHWRLRKAGFNCVKLDGGMTPKARAATIEAFSN--DINITIFLVSL 869
Query: 587 KCGGVGLNLIGGNHIVMLEPHWNPQIELQAQD 682
K GGV LNL + + M++P WN ++ QA D
Sbjct: 870 KAGGVALNLTEASQVFMMDPWWNGAVQWQAMD 901
Score = 41.1 bits (92), Expect = 1e-04
Identities = 28/95 (29%), Positives = 49/95 (51%), Gaps = 2/95 (2%)
Frame = +2
Query: 17 RIKSIIKKIVLKRDKSEIS--FNIPKHTVEYVHVNFNEEEKTLYDKLKCESEEAYMKAVA 190
++ S++K I+L+R K E + +P VE FNEEE+ +Y L +S+ + +A
Sbjct: 606 KVHSLLKHIMLRRTKLERADDLGLPPRVVEVRKDLFNEEEEDVYQSLYMDSKRKFNTYLA 665
Query: 191 ARESENTLSRLQQMQHVLWLILKLRQICCHPYLAM 295
E + L ++ LI ++RQ+ HP L +
Sbjct: 666 ----EGVV--LNNYANIFQLITRMRQMADHPDLVL 694
>SPAC25B8.02 |||histone deacetylase complex subunit Sds3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 267
Score = 28.7 bits (61), Expect = 0.82
Identities = 9/29 (31%), Positives = 19/29 (65%)
Frame = +2
Query: 356 CKRVLDLVDDILNTSDDKIILVSQWVEYL 442
CK +LDL D++ + D+++ + +W +L
Sbjct: 47 CKTLLDLADELRRSRDEELEIAERWRTFL 75
>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
Brl1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 692
Score = 27.1 bits (57), Expect = 2.5
Identities = 12/44 (27%), Positives = 24/44 (54%)
Frame = +2
Query: 305 NLLETNDCFKMDYMSSKCKRVLDLVDDILNTSDDKIILVSQWVE 436
+L++ N K+D +S K R L DI+ +D+++ ++E
Sbjct: 252 DLMQANINSKLDELSQKSTRAAQLYVDIMGITDERVSREPHYLE 295
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 27.1 bits (57), Expect = 2.5
Identities = 15/66 (22%), Positives = 32/66 (48%)
Frame = -2
Query: 423 ETNIILSSLVFKMSSTKSSTRLHLLLI*SILKQSFVSKRFLPCMAKYGWQQICLNFSISH 244
+T ++L+ + +T + + H+ + S + S V ++ C+A G ++I +
Sbjct: 541 KTLLLLAKPDHTVKTTTPARKQHIRGL-SYEQSSSVWSTYIKCLASAGQKEIKRSVETGR 599
Query: 243 NTCCIC 226
CCIC
Sbjct: 600 AICCIC 605
>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 743
Score = 26.6 bits (56), Expect = 3.3
Identities = 16/57 (28%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = -2
Query: 174 YASSDSHFNLSYNVFSSSLKLTCTYSTVCLGMLKEISDLSRFKT--IFLIILFMRFV 10
Y+S +H N S SL +T + CL +L L+RF+ + ++LF+ ++
Sbjct: 672 YSSISNHGNDSVIEIPHSLSITAYFLLACLLLLLIYVPLNRFRVNRVLGLLLFILYI 728
>SPAC144.05 |||ATP-dependent DNA helicase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1375
Score = 26.6 bits (56), Expect = 3.3
Identities = 9/21 (42%), Positives = 14/21 (66%)
Frame = +2
Query: 245 WLILKLRQICCHPYLAMHGRN 307
WL+ +LRQ CCHP + ++
Sbjct: 570 WLV-RLRQACCHPQVGFGNKS 589
>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
Swi6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 26.2 bits (55), Expect = 4.4
Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 2/57 (3%)
Frame = +2
Query: 5 DSTNRIKSIIKKIVLKRDKSEISFNI--PKHTVEYVHVNFNEEEKTLYDKLKCESEE 169
DS +I+ + +K + DKS+ FN P H+ + E K+ K ESE+
Sbjct: 173 DSNEKIEDVNEKTIKFADKSQEEFNENGPPSGQPNGHIESDNESKSPSQKESNESED 229
>SPBC800.11 |||inosine-uridine preferring nucleoside hydrolase
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 389
Score = 26.2 bits (55), Expect = 4.4
Identities = 14/42 (33%), Positives = 24/42 (57%)
Frame = -2
Query: 489 INVAMFFCLKKFSNIFKYSTHCETNIILSSLVFKMSSTKSST 364
INVAMF+ S +YS++C I++ +S+T ++T
Sbjct: 342 INVAMFYQKIYDSLTAEYSSYCMNGTIITPSNITISNTTNTT 383
>SPAC31F12.01 |zds1|SPAC637.14, mug88|zds family protein
Zds1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 938
Score = 26.2 bits (55), Expect = 4.4
Identities = 20/62 (32%), Positives = 29/62 (46%), Gaps = 1/62 (1%)
Frame = +2
Query: 26 SIIKKIVLKRDKSEISFNIPKHTVEYVHVNFNEEEKTLYDKLKCESE-EAYMKAVAARES 202
S++ K + DKSE S +E H N E +K D L ++ E Y +V RE
Sbjct: 517 SVVLKSSVPEDKSEDSVPSKSSVLEDKHENSVEIDKKADDSLPSNNKTEGYTPSV-VREE 575
Query: 203 EN 208
+N
Sbjct: 576 KN 577
>SPBC36.07 |iki3||RNA polymerase II elongator subunit Iki3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1253
Score = 25.8 bits (54), Expect = 5.8
Identities = 14/48 (29%), Positives = 26/48 (54%)
Frame = +2
Query: 431 VEYLKIFENFFKQKNIATLMYTGQLKVEDRILAETTFNNAADTQHRIL 574
V+YL +F K +N+ T MY+ K + + + TT +N + +I+
Sbjct: 727 VDYLDLFLTSLKPENVTTGMYSDTSKSQSQ-QSVTTIDNKVNLLCKII 773
>SPAC4C5.03 |||CTNS domain protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 302
Score = 25.8 bits (54), Expect = 5.8
Identities = 9/23 (39%), Positives = 14/23 (60%)
Frame = -2
Query: 534 VSAKILSSTFNWPVYINVAMFFC 466
+SA +LSS F W ++ + FC
Sbjct: 173 LSATVLSSNFAWAAFLGFSASFC 195
>SPAC29E6.06c ||SPAC30.10c|cysteine-tRNA ligase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 754
Score = 25.4 bits (53), Expect = 7.7
Identities = 7/17 (41%), Positives = 13/17 (76%)
Frame = +3
Query: 519 GFWPRRHSIMLPILNIE 569
GFWP+ +++P+L+ E
Sbjct: 191 GFWPKVQDVLVPLLDAE 207
>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 4924
Score = 25.4 bits (53), Expect = 7.7
Identities = 15/61 (24%), Positives = 25/61 (40%)
Frame = -2
Query: 219 RLSVFSLSRAATAFIYASSDSHFNLSYNVFSSSLKLTCTYSTVCLGMLKEISDLSRFKTI 40
RL+ R A +++SD H + S L + +C + +SRF +I
Sbjct: 686 RLASGKTDRKALKIQFSASDKHSTDFSSFNQSELLVANVLHEICEKRFNSVVSISRFSSI 745
Query: 39 F 37
F
Sbjct: 746 F 746
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,678,474
Number of Sequences: 5004
Number of extensions: 54447
Number of successful extensions: 259
Number of sequences better than 10.0: 31
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 247
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 313902888
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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