Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6k16
         (682 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cycl...    23   2.7  
AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    23   3.6  
DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex det...    22   6.2  
DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein pr...    21   8.2  

>AB193550-1|BAD66824.1|  699|Apis mellifera soluble guanylyl cyclase
           alpha 1 subunit protein.
          Length = 699

 Score = 23.0 bits (47), Expect = 2.7
 Identities = 7/16 (43%), Positives = 10/16 (62%)
 Frame = +2

Query: 233 QHVLWLILKLRQICCH 280
           Q + W+ LK+ Q C H
Sbjct: 557 QQIAWMALKMIQACSH 572



 Score = 22.2 bits (45), Expect = 4.7
 Identities = 12/27 (44%), Positives = 14/27 (51%)
 Frame = +2

Query: 143 DKLKCESEEAYMKAVAARESENTLSRL 223
           DKLK   EEA +   A RE   +L  L
Sbjct: 440 DKLKSSIEEANLAVSAEREKNVSLLHL 466


>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.6 bits (46), Expect = 3.6
 Identities = 9/24 (37%), Positives = 12/24 (50%)
 Frame = +2

Query: 239 VLWLILKLRQICCHPYLAMHGRNL 310
           + WL+L    I C     +H RNL
Sbjct: 2   IRWLLLMYLGITCQGVTDIHSRNL 25


>DQ325076-1|ABD14090.1|  191|Apis mellifera complementary sex
           determiner protein.
          Length = 191

 Score = 21.8 bits (44), Expect = 6.2
 Identities = 14/49 (28%), Positives = 19/49 (38%)
 Frame = +2

Query: 5   DSTNRIKSIIKKIVLKRDKSEISFNIPKHTVEYVHVNFNEEEKTLYDKL 151
           D T R +S   KI+       I  N   +   Y + N+N      Y KL
Sbjct: 69  DRTERERSREPKIISSLSNKTIHNNNNYNNNNYNNYNYNNNNYNNYKKL 117


>DQ011228-1|AAY63897.1|  486|Apis mellifera Amt-2-like protein
           protein.
          Length = 486

 Score = 21.4 bits (43), Expect = 8.2
 Identities = 6/11 (54%), Positives = 8/11 (72%)
 Frame = -2

Query: 294 MAKYGWQQICL 262
           +  +GWQ ICL
Sbjct: 394 LLNFGWQMICL 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 175,059
Number of Sequences: 438
Number of extensions: 3644
Number of successful extensions: 9
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20708550
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)