Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6k10
         (596 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0584 - 4762476-4762613,4763986-4764075,4765048-4765146,476...    42   4e-04
11_01_0730 - 6037375-6037509,6037892-6038019,6038339-6038423,603...    38   0.005
11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928     28   4.9  
05_03_0043 - 7702940-7703077,7703361-7703420,7703562-7703612,770...    28   4.9  
02_03_0101 + 15233783-15234601                                         28   6.5  

>12_01_0584 -
           4762476-4762613,4763986-4764075,4765048-4765146,
           4766032-4766154,4766243-4766405,4767307-4767356,
           4767826-4767942,4769477-4769683,4769763-4769900,
           4771212-4771274,4771358-4771441,4771933-4772084,
           4772219-4772357,4772814-4772924
          Length = 557

 Score = 41.9 bits (94), Expect = 4e-04
 Identities = 31/103 (30%), Positives = 47/103 (45%), Gaps = 5/103 (4%)
 Frame = +2

Query: 290 PARWHNYLQCGQVIKDSNLICFKTPLQPELFAYVTSEEDVWTTEQIV----KQNPSIGAI 457
           P  W +    G+ I    ++  K PL  E F         ++++Q+V    K    IG +
Sbjct: 82  PQGWLDCPGSGEPI--DRIVPSKVPLD-ETFNESVPAGKRYSSKQVVNKQRKAGRDIGLV 138

Query: 458 IDLTNTSKYYDGVHFLRAGLLYKKIQVPGQ-TLPSESIVQEFI 583
           IDLTNT++YY    + R G  Y KI   G+  +P    V  F+
Sbjct: 139 IDLTNTTRYYSPTEWTRQGTKYVKIACKGRDAVPDNESVNTFV 181


>11_01_0730 -
           6037375-6037509,6037892-6038019,6038339-6038423,
           6038525-6038614,6040015-6040113,6040207-6040335,
           6041341-6041463,6041549-6041711,6042331-6042380,
           6042593-6042706,6042993-6043199,6043275-6043412,
           6044708-6044770,6044845-6044928,6045014-6045094,
           6045212-6045363,6045479-6045614,6045991-6046107
          Length = 697

 Score = 38.3 bits (85), Expect = 0.005
 Identities = 18/47 (38%), Positives = 27/47 (57%), Gaps = 1/47 (2%)
 Frame = +2

Query: 446 IGAIIDLTNTSKYYDGVHFLRAGLLYKKIQVPGQ-TLPSESIVQEFI 583
           IG +IDLTNT++YY    + R G+ + KI   G+  +P    V  F+
Sbjct: 163 IGLVIDLTNTTRYYSPAEWTRQGIKHVKIPCKGRDAVPDNESVNWFV 209


>11_06_0053 + 19667076-19667774,19668001-19669803,19669911-19669928
          Length = 839

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 16/57 (28%), Positives = 31/57 (54%)
 Frame = +2

Query: 338 SNLICFKTPLQPELFAYVTSEEDVWTTEQIVKQNPSIGAIIDLTNTSKYYDGVHFLR 508
           SN++C    L  E +++VT     W   Q++K+N  I +  ++ + +K   GV+ L+
Sbjct: 197 SNMLC---QLDKEKYSHVTKAS--WGEAQLIKRNTGIPSKQEILDVAKEVGGVYQLK 248


>05_03_0043 -
           7702940-7703077,7703361-7703420,7703562-7703612,
           7705355-7705408,7707260-7707325,7707552-7707629,
           7708568-7708970,7710492-7710493,7711076-7711078
          Length = 284

 Score = 28.3 bits (60), Expect = 4.9
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = -1

Query: 566 CFQTAKSGQVLEFFCITGPPAKSAHHHN 483
           C  T+    +L+F     PP   +HHHN
Sbjct: 103 CITTSLGSNMLDFSNTAAPPELRSHHHN 130


>02_03_0101 + 15233783-15234601
          Length = 272

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 17/50 (34%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
 Frame = +2

Query: 320 GQVIKDSNLICFKTPLQPELFAYVTSEEDV-WTTEQIVKQNPSIGAIIDL 466
           GQV+ D  ++  K      LF  V    DV W TEQ+V  +  +G ++D+
Sbjct: 14  GQVLDDMEVVEMKY-----LFGKVLMPSDVSWDTEQLVIPDEHVGKLLDM 58


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,037,465
Number of Sequences: 37544
Number of extensions: 257789
Number of successful extensions: 548
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 534
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 548
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)