Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6k10
(596 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z68319-5|CAA92703.1| 261|Caenorhabditis elegans Hypothetical pr... 63 1e-10
Z22178-4|CAA80156.1| 359|Caenorhabditis elegans Hypothetical pr... 58 5e-09
Z75525-7|CAH10769.1| 573|Caenorhabditis elegans Hypothetical pr... 33 0.12
Z75525-6|CAA99765.2| 623|Caenorhabditis elegans Hypothetical pr... 33 0.12
AF003925-1|AAB61344.1| 573|Caenorhabditis elegans mRNA capping ... 33 0.12
U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell l... 29 2.5
AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger p... 29 2.5
Z83235-10|CAB05776.2| 515|Caenorhabditis elegans Hypothetical p... 28 4.4
AL032645-2|CAA21675.2| 515|Caenorhabditis elegans Hypothetical ... 28 4.4
AF273814-1|AAG15163.1| 489|Caenorhabditis elegans nuclear recep... 28 4.4
AF273813-1|AAG15162.1| 454|Caenorhabditis elegans nuclear recep... 28 4.4
Z81486-6|CAB03988.2| 309|Caenorhabditis elegans Hypothetical pr... 28 5.8
AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical ... 27 7.7
>Z68319-5|CAA92703.1| 261|Caenorhabditis elegans Hypothetical
protein T23G7.5a protein.
Length = 261
Score = 63.3 bits (147), Expect = 1e-10
Identities = 39/111 (35%), Positives = 56/111 (50%), Gaps = 6/111 (5%)
Frame = +2
Query: 281 KMFPARWHNYLQCGQVIKDSNLICFKTPLQPELF----AYVTSEEDVWTTEQIVKQ-NPS 445
K P RW+ Y G+ I + + FKTPL F V + V T + +Q N
Sbjct: 51 KRLPDRWNIYDNVGRDIDGTRFVPFKTPLDSSFFDGKNMPVELQFGVKTLISLAQQANKQ 110
Query: 446 IGAIIDLTNTSKYYDGVHFLRAGLLYKKIQVPGQTL-PSESIVQEFIDTVE 595
IG +IDLTNT +YY + G+ Y K+ PG + E +VQ+FI+ V+
Sbjct: 111 IGLVIDLTNTDRYYKKTEWADHGVKYLKLNCPGHEVNEREDLVQDFINAVK 161
>Z22178-4|CAA80156.1| 359|Caenorhabditis elegans Hypothetical
protein F54C8.4 protein.
Length = 359
Score = 58.0 bits (134), Expect = 5e-09
Identities = 28/110 (25%), Positives = 55/110 (50%), Gaps = 4/110 (3%)
Frame = +2
Query: 278 CKMFPARWHNYLQCGQVIKDSNLICFKTPLQPELFAYVTSEEDVWTTE---QIVKQNPSI 448
C++ P W + G VI + I FKTP+ +L + E+ T + Q+ ++ +
Sbjct: 5 CRVVPKDWSKFQPVGNVIPRTRFIVFKTPINSQLSTKIHKEQRFTTNDLFRQLSERGQYL 64
Query: 449 GAIIDLTNTSKYYDGVHFLRAGLLYKKIQVPGQ-TLPSESIVQEFIDTVE 595
G ++DL++T +YYD + Y+K+ PG+ + + V+ F ++
Sbjct: 65 GLVVDLSDTDRYYDKKDITGMCVQYEKVNCPGRGFIERDDCVESFHQVIQ 114
>Z75525-7|CAH10769.1| 573|Caenorhabditis elegans Hypothetical
protein C03D6.3b protein.
Length = 573
Score = 33.5 bits (73), Expect = 0.12
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Frame = +2
Query: 290 PARWHNYLQCGQVIKDSNLICFKTPLQPELFAYVTSEEDVWTTEQIVKQ----NPSIGAI 457
P RW + + G +I + FKTPL + + ++ IG
Sbjct: 4 PDRWLHCPKTGTLINNL-FFPFKTPLCKMYDNQIAERRYQFHPAEVFSHPHLHGKKIGLW 62
Query: 458 IDLTNTSKYYDGVHFLRAGLLYKKIQVPGQTL-PSESIVQEFIDTVE 595
IDLTNT +YY +Y K+++ G+ + P++ FI V+
Sbjct: 63 IDLTNTDRYYFREEVTEHECIYHKMKMAGRGVSPTQEDTDNFIKLVQ 109
>Z75525-6|CAA99765.2| 623|Caenorhabditis elegans Hypothetical
protein C03D6.3a protein.
Length = 623
Score = 33.5 bits (73), Expect = 0.12
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Frame = +2
Query: 290 PARWHNYLQCGQVIKDSNLICFKTPLQPELFAYVTSEEDVWTTEQIVKQ----NPSIGAI 457
P RW + + G +I + FKTPL + + ++ IG
Sbjct: 16 PDRWLHCPKTGTLINNL-FFPFKTPLCKMYDNQIAERRYQFHPAEVFSHPHLHGKKIGLW 74
Query: 458 IDLTNTSKYYDGVHFLRAGLLYKKIQVPGQTL-PSESIVQEFIDTVE 595
IDLTNT +YY +Y K+++ G+ + P++ FI V+
Sbjct: 75 IDLTNTDRYYFREEVTEHECIYHKMKMAGRGVSPTQEDTDNFIKLVQ 121
>AF003925-1|AAB61344.1| 573|Caenorhabditis elegans mRNA capping
enzyme protein.
Length = 573
Score = 33.5 bits (73), Expect = 0.12
Identities = 27/107 (25%), Positives = 45/107 (42%), Gaps = 5/107 (4%)
Frame = +2
Query: 290 PARWHNYLQCGQVIKDSNLICFKTPLQPELFAYVTSEEDVWTTEQIVKQ----NPSIGAI 457
P RW + + G +I + FKTPL + + ++ IG
Sbjct: 4 PDRWLHCPKTGTLINNL-FFPFKTPLCKMYDNQIAERRYQFHPAEVFSHPHLHGKKIGLW 62
Query: 458 IDLTNTSKYYDGVHFLRAGLLYKKIQVPGQTL-PSESIVQEFIDTVE 595
IDLTNT +YY +Y K+++ G+ + P++ FI V+
Sbjct: 63 IDLTNTDRYYFREEVTEHECIYHKMKMAGRGVSPTQEDTDNFIKLVQ 109
>U00041-1|AAA50671.3| 2248|Caenorhabditis elegans Abnormal cell
lineage protein 13 protein.
Length = 2248
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3
Query: 69 RFTSRILRVKHDQEMTSFVFQN 4
RF S+ L VKHDQE SF+ N
Sbjct: 2039 RFASKALCVKHDQEHASFLDSN 2060
>AF245435-1|AAF87497.1| 2248|Caenorhabditis elegans zinc finger
protein LIN-13 protein.
Length = 2248
Score = 29.1 bits (62), Expect = 2.5
Identities = 13/22 (59%), Positives = 15/22 (68%)
Frame = -3
Query: 69 RFTSRILRVKHDQEMTSFVFQN 4
RF S+ L VKHDQE SF+ N
Sbjct: 2039 RFASKALCVKHDQEHASFLDSN 2060
>Z83235-10|CAB05776.2| 515|Caenorhabditis elegans Hypothetical
protein Y67A6A.2 protein.
Length = 515
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 480 NIMMVCTFCGRACYTKKFKYLARLCRLKASF 572
N +C F GR K+ + + R CRLK F
Sbjct: 129 NRQYLCRFEGRCAIAKEHRNVCRACRLKQCF 159
>AL032645-2|CAA21675.2| 515|Caenorhabditis elegans Hypothetical
protein Y67A6A.2 protein.
Length = 515
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 480 NIMMVCTFCGRACYTKKFKYLARLCRLKASF 572
N +C F GR K+ + + R CRLK F
Sbjct: 129 NRQYLCRFEGRCAIAKEHRNVCRACRLKQCF 159
>AF273814-1|AAG15163.1| 489|Caenorhabditis elegans nuclear receptor
NHR-62 protein.
Length = 489
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 480 NIMMVCTFCGRACYTKKFKYLARLCRLKASF 572
N +C F GR K+ + + R CRLK F
Sbjct: 103 NRQYLCRFEGRCAIAKEHRNVCRACRLKQCF 133
>AF273813-1|AAG15162.1| 454|Caenorhabditis elegans nuclear receptor
NHR-62 protein.
Length = 454
Score = 28.3 bits (60), Expect = 4.4
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 480 NIMMVCTFCGRACYTKKFKYLARLCRLKASF 572
N +C F GR K+ + + R CRLK F
Sbjct: 68 NRQYLCRFEGRCAIAKEHRNVCRACRLKQCF 98
>Z81486-6|CAB03988.2| 309|Caenorhabditis elegans Hypothetical
protein C53A5.8 protein.
Length = 309
Score = 27.9 bits (59), Expect = 5.8
Identities = 20/63 (31%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -2
Query: 577 FLNDAFRRQSLARYLNFFV*QARPQKVHTII-IFRRVG*IDYCSNTGVLFYYLFCGPHIF 401
FL+ + R + L +L FF A +H I + VG ++ + L+Y + CG IF
Sbjct: 96 FLSISSRGKFLFFHLQFFT--ALSMNIHRISSVTHPVGHGEFWTKYFKLYYVILCGISIF 153
Query: 400 FAS 392
F S
Sbjct: 154 FTS 156
>AC024801-9|AAF59653.3| 791|Caenorhabditis elegans Hypothetical
protein Y50D7A.1 protein.
Length = 791
Score = 27.5 bits (58), Expect = 7.7
Identities = 20/74 (27%), Positives = 34/74 (45%)
Frame = +2
Query: 341 NLICFKTPLQPELFAYVTSEEDVWTTEQIVKQNPSIGAIIDLTNTSKYYDGVHFLRAGLL 520
N + +TPL+ E + + W T Q+ K NP+ A +T K + +R GLL
Sbjct: 274 NELHLETPLRVERLQILDIRHETWKTVQLEKWNPADPAPFPRFHTRK--TKLILIRDGLL 331
Query: 521 YKKIQVPGQTLPSE 562
+ G+ +P +
Sbjct: 332 L----ITGELIPQD 341
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,985,863
Number of Sequences: 27780
Number of extensions: 256675
Number of successful extensions: 618
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 600
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 616
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1268802960
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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