Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6k01
(526 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4D7.05 |sum1|tif34|translation initiation factor eIF3i|Schiz... 38 0.001
SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13... 36 0.005
SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit Git... 36 0.005
SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyc... 35 0.009
SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|c... 34 0.015
SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces pom... 33 0.020
SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces ... 33 0.020
SPAC630.14c |tup12||transcriptional corepressor Tup12 |Schizosac... 33 0.020
SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces pom... 33 0.020
SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr 2|||... 33 0.026
SPAC23C4.02 |crn1||actin binding protein, coronin Crn1|Schizosac... 33 0.026
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe... 33 0.026
SPAC343.04c |gnr1||heterotrimeric G protein beta subunit Gnr1|Sc... 32 0.060
SPBC713.04c |||U3 snoRNP-associated protein Utp1|Schizosaccharom... 31 0.080
SPAC18B11.10 |tup11||transcriptional corepressor Tup11|Schizosac... 31 0.11
SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5... 31 0.11
SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein Pop1... 30 0.18
SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces pomb... 30 0.24
SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr 2|... 30 0.24
SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1 |Schizosaccharo... 30 0.24
SPAC806.02c |||Par A family ATPase iron cluster assembly protein... 29 0.32
SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces pombe... 29 0.32
SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31 |Schizo... 29 0.56
SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces pomb... 28 0.74
SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces pomb... 28 0.74
SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit S... 28 0.74
SPCC777.15 |||tRNA dihydrouridine synthase Dus4 |Schizosaccharom... 28 0.74
SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces p... 28 0.74
SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein Pof11|Schizos... 28 0.74
SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces p... 28 0.74
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 28 0.98
SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces pom... 28 0.98
SPBC15D4.14 |taf73||TATA-binding protein associated factor |Schi... 27 1.3
SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces po... 27 1.3
SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces ... 27 1.3
SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit Prw1... 27 1.3
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 27 1.7
SPBC32F12.02 |rec14||recombination protein Rec14|Schizosaccharom... 27 1.7
SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces p... 27 1.7
SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyce... 27 1.7
SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces po... 27 2.3
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch... 26 3.0
SPCC126.01c ||SPCC576.18c|conserved fungal protein|Schizosacchar... 26 3.0
SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces p... 26 4.0
SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit Swd2|Schizosa... 26 4.0
SPAC25H1.08c |||ribosome biogenesis protein Sqt1|Schizosaccharom... 26 4.0
SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein Pop2|Schizosacchar... 25 5.2
SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomy... 25 5.2
SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6 family|Schi... 25 5.2
SPAC890.04c |||ribosome biogenesis protein Ytm1 |Schizosaccharom... 25 5.2
SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual 25 6.9
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 6.9
SPBC8D2.01 |gsk31||serine/threonine protein kinase Gsk31|Schizos... 25 6.9
SPBC1A4.07c |||U3 snoRNP-associated protein Sof1|Schizosaccharom... 25 6.9
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc... 25 6.9
SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces po... 25 9.1
SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|ch... 25 9.1
>SPAC4D7.05 |sum1|tif34|translation initiation factor
eIF3i|Schizosaccharomyces pombe|chr 1|||Manual
Length = 328
Score = 37.5 bits (83), Expect = 0.001
Identities = 17/45 (37%), Positives = 24/45 (53%)
Frame = +3
Query: 90 YFHFPSQRKNIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
+F +R +GHT I+ C N KS ++SG DNT+ WD
Sbjct: 37 WFSHNGERLGTYEGHTGAIWTCDIN-KSSTLMVSGAADNTMRLWD 80
>SPCC16A11.02 |utp13|SPCC63.16|U3 snoRNP-associated protein Utp13
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 777
Score = 35.5 bits (78), Expect = 0.005
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = +3
Query: 120 IMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
++ GH ++AC+FNP S +L SG D T+ W+
Sbjct: 502 VLRGHRRGVWACSFNPFS-RQLASGSGDRTIRIWN 535
Score = 25.0 bits (52), Expect = 6.9
Identities = 13/35 (37%), Positives = 18/35 (51%)
Frame = +3
Query: 123 MDGHTSRIFACAFNPKSHHELISGGWDNTVMFWDD 227
+D H R++A A + L+SGG D V W D
Sbjct: 587 LDNHEDRVWALA-SRFDGSLLVSGGADAVVSVWKD 620
>SPBC32H8.07 |git5|gpb1|heterotrimeric G protein beta subunit
Git5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 305
Score = 35.5 bits (78), Expect = 0.005
Identities = 20/54 (37%), Positives = 24/54 (44%)
Frame = +3
Query: 129 GHTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQPYATRYLFGVHMCGEGLDF 290
GH + C + H L++G D T MFWD Q A L G M LDF
Sbjct: 104 GHAGFVSCCKYVDDGH--LLTGSGDKTCMFWDIEQAKAISVLKGHEMDIVSLDF 155
Score = 30.3 bits (65), Expect = 0.18
Identities = 14/54 (25%), Positives = 26/54 (48%)
Frame = +3
Query: 78 SCM*YFHFPSQRKNIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQPY 239
+CM + ++ +++ GH I + F P + + ++GG D WD R Y
Sbjct: 128 TCMFWDIEQAKAISVLKGHEMDIVSLDFLPSNPNLFVTGGCDKLAKLWDLRAAY 181
>SPCC1672.10 |mis16||kinetochore protein Mis16 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 430
Score = 34.7 bits (76), Expect = 0.009
Identities = 15/40 (37%), Positives = 21/40 (52%)
Frame = +3
Query: 120 IMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQPY 239
++ H+ I A A NP + + L + D TV WD R PY
Sbjct: 276 VIQAHSKAINAVAINPFNDYLLATASADKTVALWDLRNPY 315
Score = 31.1 bits (67), Expect = 0.11
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 102 PSQRKNIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
P QR + ++GH ++ ++P L S D V WD
Sbjct: 314 PYQRLHTLEGHEDEVYGLEWSPHDEPILASSSTDRRVCIWD 354
Score = 30.3 bits (65), Expect = 0.18
Identities = 11/35 (31%), Positives = 17/35 (48%)
Frame = +3
Query: 120 IMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
++ GHT+ F +NP L +G D + WD
Sbjct: 177 VLKGHTAEGFGLCWNPNLPGNLATGAEDQVICLWD 211
>SPCC18.05c |||notchless-like protein|Schizosaccharomyces pombe|chr
3|||Manual
Length = 502
Score = 33.9 bits (74), Expect = 0.015
Identities = 17/43 (39%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Frame = +3
Query: 123 MDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD-DRQ-PYAT 245
M+GH I + F+P + L++G D T WD D Q P AT
Sbjct: 130 MNGHDGTIISAQFSPSTSSRLVTGSGDFTARLWDCDTQTPIAT 172
Score = 31.1 bits (67), Expect = 0.11
Identities = 13/37 (35%), Positives = 22/37 (59%)
Frame = +3
Query: 123 MDGHTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQ 233
M GHT+ + A+ P + + +G DNT+ FWD ++
Sbjct: 173 MKGHTNWVSCVAWAPDASI-IATGSMDNTIRFWDPKK 208
>SPBC6B1.10 |prp17||splicing factor Prp17|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 558
Score = 33.5 bits (73), Expect = 0.020
Identities = 15/43 (34%), Positives = 20/43 (46%)
Frame = +3
Query: 96 HFPSQRKNIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
+ P + GHT I F P S H L+SG DN + W+
Sbjct: 253 YIPKKHIFTWKGHTKGISCLRFFPISGHLLLSGSMDNQIKIWE 295
>SPAC6B12.15 |cpc2|rkp1|RACK1 homologue Cpc2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 314
Score = 33.5 bits (73), Expect = 0.020
Identities = 15/46 (32%), Positives = 22/46 (47%)
Frame = +3
Query: 123 MDGHTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQPYATRYLFG 260
+ GH+ + CA + SH+ L S WD T+ WD + T G
Sbjct: 59 LTGHSHFVSDCALSFDSHYAL-SASWDKTIRLWDLEKGECTHQFVG 103
Score = 28.7 bits (61), Expect = 0.56
Identities = 11/33 (33%), Positives = 16/33 (48%), Gaps = 1/33 (3%)
Frame = +3
Query: 129 GHTSRIFACAFNPKSHH-ELISGGWDNTVMFWD 224
GH+ + F+P + +S GWD V WD
Sbjct: 146 GHSDWVSCVRFSPNPDNLTFVSAGWDKAVKVWD 178
Score = 27.5 bits (58), Expect = 1.3
Identities = 13/32 (40%), Positives = 16/32 (50%)
Frame = +3
Query: 129 GHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
GHT + A +P SGG D T+M WD
Sbjct: 190 GHTGYVSAVTISPDGSL-CASGGRDGTLMLWD 220
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/34 (23%), Positives = 21/34 (61%)
Frame = +3
Query: 123 MDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
++GH+ + + + P++ L+SG D +++ W+
Sbjct: 11 LEGHSGWVTSLSTAPENPDILLSGSRDKSIILWN 44
>SPAC630.14c |tup12||transcriptional corepressor Tup12
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 586
Score = 33.5 bits (73), Expect = 0.020
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 123 MDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
+ GH +++ AF+P + L+SG DNT+ W+
Sbjct: 454 LHGHEESVYSVAFSPDGKY-LVSGSLDNTIKLWE 486
Score = 31.1 bits (67), Expect = 0.11
Identities = 19/52 (36%), Positives = 24/52 (46%)
Frame = +3
Query: 156 AFNPKSHHELISGGWDNTVMFWDDRQPYATRYLFGVHMCGEGLDFDKPGKTV 311
AF+P + L +G D + WD Q R L G LDF K GKT+
Sbjct: 341 AFSPDGKY-LATGVEDQQIRIWDIAQKRVYRLLTGHEQEIYSLDFSKDGKTL 391
Score = 29.9 bits (64), Expect = 0.24
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 120 IMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
++ GH I++ F+ K L+SG D TV WD
Sbjct: 371 LLTGHEQEIYSLDFS-KDGKTLVSGSGDRTVCLWD 404
Score = 29.1 bits (62), Expect = 0.42
Identities = 15/49 (30%), Positives = 21/49 (42%)
Frame = +3
Query: 114 KNIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQPYATRYLFG 260
K GH I + +P +ISG D T+ FW P++ L G
Sbjct: 505 KQTFTGHKDFILSVTVSPDGKW-IISGSKDRTIQFWSPDSPHSQLTLQG 552
>SPBC354.03 |swd3||WD repeat protein Swd3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 380
Score = 33.5 bits (73), Expect = 0.020
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +3
Query: 123 MDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
+ GHT+ + + FNP L+SG WD TV W+
Sbjct: 134 LKGHTNYVSSIDFNPLGTL-LVSGSWDETVRIWN 166
>SPBC577.09 |||ERCC-8 homolog |Schizosaccharomyces pombe|chr
2|||Manual
Length = 404
Score = 33.1 bits (72), Expect = 0.026
Identities = 14/37 (37%), Positives = 19/37 (51%)
Frame = +3
Query: 123 MDGHTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQ 233
+ GHT + A + PK+ L SG D T WD R+
Sbjct: 185 LSGHTGNVLAVDWCPKNEFVLASGSADGTCRLWDIRK 221
>SPAC23C4.02 |crn1||actin binding protein, coronin
Crn1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 601
Score = 33.1 bits (72), Expect = 0.026
Identities = 14/41 (34%), Positives = 21/41 (51%)
Frame = +3
Query: 117 NIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQPY 239
N+ GHT+ + +NP L SGG D+ +M W + Y
Sbjct: 75 NLFRGHTAAVLDTDWNPFHDQVLASGGDDSKIMIWKVPEDY 115
Score = 29.9 bits (64), Expect = 0.24
Identities = 16/60 (26%), Positives = 29/60 (48%)
Frame = +3
Query: 123 MDGHTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQPYATRYLFGVHMCGEGLDFDKPG 302
+ GH+ ++ ++P + + L S DNT+ WD + A L MC + + F+ G
Sbjct: 130 LKGHSRKVGLVQYHPTAANVLASSSADNTIKLWDCEKGVAHVSLKMDVMC-QSMSFNADG 188
>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 516
Score = 33.1 bits (72), Expect = 0.026
Identities = 15/38 (39%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Frame = +3
Query: 114 KNIMDG-HTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
K I D HT + A + N +H+ L+SG D T+ WD
Sbjct: 246 KKINDSYHTDAVLALSSNRNAHNLLVSGSADTTLKLWD 283
>SPAC343.04c |gnr1||heterotrimeric G protein beta subunit
Gnr1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 507
Score = 31.9 bits (69), Expect = 0.060
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 123 MDGHTSRIFACAFNPKSHHELISGGWDNTVMFWDDR 230
+ GH + A+NP ++ S G DNTV W ++
Sbjct: 466 LSGHVKCVNYVAYNPVDPYQFASAGDDNTVRIWSNK 501
>SPBC713.04c |||U3 snoRNP-associated protein
Utp1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 854
Score = 31.5 bits (68), Expect = 0.080
Identities = 20/63 (31%), Positives = 25/63 (39%)
Frame = +3
Query: 129 GHTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQPYATRYLFGVHMCGEGLDFDKPGKT 308
GH + + +FN S L SG WD TV WD + L F GK
Sbjct: 465 GHEGPVSSLSFN-SSGSLLASGSWDKTVRIWDIFSRSGIVEPLPIPSDVLSLAFHPDGKE 523
Query: 309 VCI 317
VC+
Sbjct: 524 VCV 526
>SPAC18B11.10 |tup11||transcriptional corepressor
Tup11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 614
Score = 31.1 bits (67), Expect = 0.11
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 123 MDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
++GH +++ AF+P S L+SG D T+ W+
Sbjct: 480 LEGHKESVYSIAFSPDS-SILLSGSLDKTIKVWE 512
>SPCC5E4.03c |taf72||transcription factor TFIID complex subunit 5
Taf72|Schizosaccharomyces pombe|chr 3|||Manual
Length = 643
Score = 31.1 bits (67), Expect = 0.11
Identities = 16/39 (41%), Positives = 23/39 (58%)
Frame = +3
Query: 108 QRKNIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
+R M GH I++ +F+ +S L+SGG D TV WD
Sbjct: 538 RRIKTMRGHRGNIYSLSFSREST-VLVSGGSDCTVRAWD 575
Score = 26.6 bits (56), Expect = 2.3
Identities = 13/44 (29%), Positives = 17/44 (38%)
Frame = +3
Query: 129 GHTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQPYATRYLFG 260
GHT ++ AF P H+ + D T W Y R G
Sbjct: 419 GHTGPVWDVAFGPFGHY-FATASHDQTAQLWSCDHIYPLRVFAG 461
>SPBC1718.01 |pop1|ste16, SPBC2G2.18|F-box/WD repeat protein
Pop1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 775
Score = 30.3 bits (65), Expect = 0.18
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = +3
Query: 117 NIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
+++ GH R+++ NP S + IS G D + W+
Sbjct: 611 HVLRGHVGRVYSVTINP-SRQQCISAGTDAKIRIWN 645
>SPBPJ4664.04 |||coatomer alpha subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1207
Score = 29.9 bits (64), Expect = 0.24
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +3
Query: 120 IMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
I+ GH+ + AF+P S ++S D TV WD
Sbjct: 132 ILTGHSHYVMCAAFHP-SEDLIVSASLDQTVRVWD 165
Score = 25.8 bits (54), Expect = 4.0
Identities = 12/36 (33%), Positives = 20/36 (55%)
Frame = +3
Query: 114 KNIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFW 221
K +++GH + CAF+P + ++S G D V W
Sbjct: 205 KFVLEGHDRGVNWCAFHP-TLPLILSAGDDRLVKLW 239
>SPBC1773.01 |||striatin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 612
Score = 29.9 bits (64), Expect = 0.24
Identities = 12/31 (38%), Positives = 16/31 (51%)
Frame = +3
Query: 129 GHTSRIFACAFNPKSHHELISGGWDNTVMFW 221
GH + C PK+ H + SGG D T+ W
Sbjct: 337 GHEGPVL-CVCVPKATHHIFSGGHDGTIRCW 366
>SPAC664.15 |||CCR4-Not complex subunit Caf4/Mdv1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 651
Score = 29.9 bits (64), Expect = 0.24
Identities = 16/34 (47%), Positives = 22/34 (64%)
Frame = +3
Query: 129 GHTSRIFACAFNPKSHHELISGGWDNTVMFWDDR 230
GHT+ I + F+ S+H L SG +DN+V WD R
Sbjct: 534 GHTAPISSLQFD--SNH-LYSGSYDNSVRIWDLR 564
>SPAC806.02c |||Par A family ATPase iron cluster assembly
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 608
Score = 29.5 bits (63), Expect = 0.32
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 120 IMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWDD 227
++ HT + ++P + L+SG +DN++ FW D
Sbjct: 418 VLQEHTQDVKVVTWHP-TEDLLVSGSYDNSICFWRD 452
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/33 (36%), Positives = 18/33 (54%)
Frame = +3
Query: 123 MDGHTSRIFACAFNPKSHHELISGGWDNTVMFW 221
+ GHT+ ++A AF+P + L S D V W
Sbjct: 463 LQGHTNTVWALAFSPNG-NTLASADNDGNVFLW 494
>SPAC821.08c |slp1||sleepy homolog Slp1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 488
Score = 29.5 bits (63), Expect = 0.32
Identities = 14/36 (38%), Positives = 19/36 (52%)
Frame = +3
Query: 123 MDGHTSRIFACAFNPKSHHELISGGWDNTVMFWDDR 230
+ GH+S + A+ +L SGG DN V WD R
Sbjct: 300 LQGHSSEVCGLAWRSDGL-QLASGGNDNVVQIWDAR 334
>SPBC8D2.20c |sec31||COPII-coated vesicle component Sec31
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1224
Score = 28.7 bits (61), Expect = 0.56
Identities = 12/41 (29%), Positives = 21/41 (51%)
Frame = +3
Query: 102 PSQRKNIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
P+ +NI+ GH + ++ P+ L+S G D M W+
Sbjct: 249 PTVPQNILTGHQKAALSLSWCPEDPTFLLSSGKDGRAMVWN 289
>SPAC57A10.05c |pof1||F-box protein Pof1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 605
Score = 28.3 bits (60), Expect = 0.74
Identities = 15/51 (29%), Positives = 25/51 (49%)
Frame = +3
Query: 108 QRKNIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQPYATRYLFG 260
Q+ +++GH+S + F+ +LISG D T+ W+ R L G
Sbjct: 304 QQVALLEGHSSGVTCLQFD---QCKLISGSMDKTIRIWNYRTSECISILHG 351
>SPBC428.19c |||U3 snoRNP protein Utp15 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 494
Score = 28.3 bits (60), Expect = 0.74
Identities = 12/36 (33%), Positives = 19/36 (52%)
Frame = +3
Query: 123 MDGHTSRIFACAFNPKSHHELISGGWDNTVMFWDDR 230
+ GH + ++ S L+SGG+D T+ WD R
Sbjct: 162 LSGHEDYVRTASW--MSATRLVSGGYDGTIRLWDTR 195
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = +3
Query: 123 MDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
+D H + F P ++ +SG D TV WD
Sbjct: 119 LDAHQFPVHVTQFCPYANTTFLSGSDDKTVKVWD 152
>SPBC21H7.05 |sfc6||transcription factor TFIIIC complex subunit
Sfc6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 582
Score = 28.3 bits (60), Expect = 0.74
Identities = 11/35 (31%), Positives = 18/35 (51%)
Frame = -3
Query: 308 RFSRLIEIQTFSTHVNSEKVTCCIWLSIIPEHNSV 204
+F +E F+ N ++CC W+S PEH +
Sbjct: 312 KFHVFVEQADFTFGFNDSLISCCTWVS--PEHGDI 344
>SPCC777.15 |||tRNA dihydrouridine synthase Dus4
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 326
Score = 28.3 bits (60), Expect = 0.74
Identities = 18/80 (22%), Positives = 33/80 (41%), Gaps = 3/80 (3%)
Frame = +1
Query: 187 YLEVGITLLCSGMIDNHMQHVTFSE--FTCVEK-VWISISLEKRFAYFLHY*AIVFHSVS 357
Y E + G+++N + E + CVE+ +W S S F F H+ + ++
Sbjct: 223 YTETQGIMSARGLLENPALFAGYEETPWGCVERFLWYSTSYSLNFHLFYHHLTTMMGQMT 282
Query: 358 ADERRFNFAIDKVATCLKFL 417
R D A+ + +L
Sbjct: 283 TKRERMTIPKDSFASVMDWL 302
>SPBC16A3.05c |rae1||RNA export factor Rae1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 352
Score = 28.3 bits (60), Expect = 0.74
Identities = 12/23 (52%), Positives = 15/23 (65%), Gaps = 2/23 (8%)
Frame = +3
Query: 183 LISGGWDNTVMFWDDRQ--PYAT 245
L +G WD T+ +WD RQ P AT
Sbjct: 133 LATGSWDKTLKYWDLRQSTPIAT 155
>SPAC29E6.01 |pof11|SPAC30.05, mug156|F-box protein
Pof11|Schizosaccharomyces pombe|chr 1|||Manual
Length = 506
Score = 28.3 bits (60), Expect = 0.74
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 120 IMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
++ GH I FN + +++SGG+D TV W+
Sbjct: 424 MLQGHEDLIRTVRFNDE---KIVSGGYDGTVRIWN 455
Score = 26.2 bits (55), Expect = 3.0
Identities = 12/44 (27%), Positives = 22/44 (50%)
Frame = +3
Query: 129 GHTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQPYATRYLFG 260
GH+ + F + + L+SG D+T++ WD + + FG
Sbjct: 259 GHSGSVLCLDFC-RRRNLLVSGSSDSTIIIWDWQNRRPLKVYFG 301
>SPBC14C8.17c |||SAGA complex subunit Spt8 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 526
Score = 28.3 bits (60), Expect = 0.74
Identities = 11/31 (35%), Positives = 18/31 (58%)
Frame = +3
Query: 132 HTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
HT+ + A + S +++SG WD V +WD
Sbjct: 231 HTAPVSCLALHG-SEKKVLSGSWDKMVYYWD 260
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 27.9 bits (59), Expect = 0.98
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 126 DGHTSRIFACAFNPKSHHELISGGWDNTVMFW 221
+GH+ + + A NPK + S D TV W
Sbjct: 138 EGHSRYVMSLAINPKDTNTFASSCLDGTVKVW 169
>SPAC17D4.01 |pex7|SPAC1834.12|peroxin-7 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 308
Score = 27.9 bits (59), Expect = 0.98
Identities = 13/51 (25%), Positives = 22/51 (43%)
Frame = +3
Query: 102 PSQRKNIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQPYATRYL 254
PS+ + H + I A N +++G WD T+ W P + + L
Sbjct: 92 PSKPIHKWKEHKAEIVAIDTNTVDRRIVVTGSWDGTIKLWLGNLPNSVQTL 142
>SPBC15D4.14 |taf73||TATA-binding protein associated factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 642
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/31 (38%), Positives = 20/31 (64%)
Frame = +3
Query: 132 HTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
H+S +++ +F+ + L+SGG D V FWD
Sbjct: 570 HSSIVYSLSFS-YDNKILVSGGADTDVNFWD 599
>SPBC887.04c |lub1||WD repeat protein Lub1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 713
Score = 27.5 bits (58), Expect = 1.3
Identities = 11/31 (35%), Positives = 17/31 (54%)
Frame = +3
Query: 129 GHTSRIFACAFNPKSHHELISGGWDNTVMFW 221
GH S I C+ + + +I+G WD+T W
Sbjct: 96 GHESNI--CSASALNSETIITGSWDSTARVW 124
>SPCC4G3.14 |mdj1||DNAJ domain protein Mdj1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 528
Score = 27.5 bits (58), Expect = 1.3
Identities = 20/80 (25%), Positives = 38/80 (47%), Gaps = 4/80 (5%)
Frame = -3
Query: 461 RYLRTSKNEIFKLSNKNFRQVATLSMAKLKR----LSSAETEWNTIA***RKYANRFSRL 294
+YL++ + +N + +Q+ + S+A R +SS+ T++ +A R FSR
Sbjct: 4 KYLQSRVCGLHSFTNSSAQQLFSKSIAHSSRRNFVISSSCTKFRNVAIQ-RNAKREFSRC 62
Query: 293 IEIQTFSTHVNSEKVTCCIW 234
++ FS H T +W
Sbjct: 63 AALKNFSYHARCFHATRAVW 82
>SPAC29A4.18 |prw1||Clr6 histone deacetylase complex subunit
Prw1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 431
Score = 27.5 bits (58), Expect = 1.3
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +3
Query: 132 HTSRIFACAFNPKSHHELISGGWDNTVMFWDDR 230
H+ I + AFNP + L + D T+ WD R
Sbjct: 280 HSGPIHSVAFNPHNDFILATCSTDKTIALWDLR 312
Score = 26.6 bits (56), Expect = 2.3
Identities = 11/40 (27%), Positives = 19/40 (47%)
Frame = +3
Query: 105 SQRKNIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
+QR + ++GH + +F+P L S D + WD
Sbjct: 315 NQRLHTLEGHEDIVTKISFSPHEEPILASTSADRRTLVWD 354
Score = 24.6 bits (51), Expect = 9.1
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +3
Query: 102 PSQRKNIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
P + K + HT + +N S L+SG D T+ WD
Sbjct: 173 PLKPKYRLTKHTQPCTSVCWNFLSKGTLVSGSQDATLSCWD 213
>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
Bub3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 320
Score = 27.1 bits (57), Expect = 1.7
Identities = 14/36 (38%), Positives = 22/36 (61%)
Frame = +3
Query: 114 KNIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFW 221
KN DG +S IF+ P +ELI+G WD +++ +
Sbjct: 9 KNSKDGISSVIFS----PSVKNELIAGCWDGSLLHY 40
Score = 24.6 bits (51), Expect = 9.1
Identities = 10/34 (29%), Positives = 16/34 (47%)
Frame = +3
Query: 129 GHTSRIFACAFNPKSHHELISGGWDNTVMFWDDR 230
G+ + +C + + ISG WD + WD R
Sbjct: 92 GNHGKGVSCISKLRLENCFISGSWDKSFRVWDVR 125
>SPBC32F12.02 |rec14||recombination protein
Rec14|Schizosaccharomyces pombe|chr 2|||Manual
Length = 302
Score = 27.1 bits (57), Expect = 1.7
Identities = 13/32 (40%), Positives = 17/32 (53%)
Frame = +3
Query: 129 GHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
GH + IFA AFNP L+S + + WD
Sbjct: 227 GHAAWIFAVAFNPVG-DLLLSADVEGKIKIWD 257
>SPCC18B5.10c |||TREX complex subunit Tex1 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 309
Score = 27.1 bits (57), Expect = 1.7
Identities = 12/34 (35%), Positives = 16/34 (47%)
Frame = +3
Query: 132 HTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQ 233
H S F F+P + H L GG D WD ++
Sbjct: 193 HNSNCFCIEFSPDNRH-LAIGGADAITSLWDPQE 225
>SPBP22H7.07 |prp5|cwf1|WD repeat protein Prp5|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 473
Score = 27.1 bits (57), Expect = 1.7
Identities = 10/39 (25%), Positives = 22/39 (56%)
Frame = +3
Query: 108 QRKNIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
Q +++ GH S + + A + ++++G D+T+ WD
Sbjct: 280 QNVHVLSGHKSTVASLAVQ-EFDPQVVTGSMDSTIRLWD 317
>SPAC144.13c |srw1|ste9|CDK inhibitor Srw1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 556
Score = 26.6 bits (56), Expect = 2.3
Identities = 12/41 (29%), Positives = 19/41 (46%)
Frame = +3
Query: 102 PSQRKNIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
P ++ H + +N + + L SGG DN +M WD
Sbjct: 363 PEHYFRVLTAHRQEVCGLEWN-SNENLLASGGNDNALMVWD 402
>SPAC343.17c |||WD repeat protein, human WDR70
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 576
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 129 GHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
GH + I + P S ++ G+D+T WD
Sbjct: 195 GHIAEITDGCWQPDSSQIFLTTGYDSTARIWD 226
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/41 (26%), Positives = 19/41 (46%)
Frame = +3
Query: 102 PSQRKNIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
P + + GH+ + F+ K+ +G DNT+ WD
Sbjct: 78 PGSHEIMFPGHSKIVTTTTFD-KNGSRFYTGSLDNTIHCWD 117
>SPCC126.01c ||SPCC576.18c|conserved fungal
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 369
Score = 26.2 bits (55), Expect = 3.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 129 GHTSRIFACAFNPKSHHELISGGWDNTVMFW 221
GH S ++ F+P+ L + D TV W
Sbjct: 220 GHQSNVYCLLFDPQDSEALWTASADKTVREW 250
>SPBC31F10.13c |hip1|hir1|hira protein Hip1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 932
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/25 (44%), Positives = 16/25 (64%)
Frame = +1
Query: 16 WHEYLLRVCILLCASLHLRYIVACD 90
W +YL R IL+ S+H + +ACD
Sbjct: 630 WMDYLPRPVILVTGSIHF-WSIACD 653
>SPBC18H10.06c |swd2|swd2.1|COMPASS complex subunit
Swd2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 357
Score = 25.8 bits (54), Expect = 4.0
Identities = 11/36 (30%), Positives = 17/36 (47%)
Frame = +3
Query: 129 GHTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQP 236
GH + + +P + +S DNT+ WD R P
Sbjct: 110 GHKQTVTSIDVSP-ADETFLSASLDNTIRLWDLRSP 144
>SPAC25H1.08c |||ribosome biogenesis protein
Sqt1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 399
Score = 25.8 bits (54), Expect = 4.0
Identities = 10/31 (32%), Positives = 15/31 (48%)
Frame = +3
Query: 132 HTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
H +F+ + NP + SGG D+ WD
Sbjct: 60 HKDSVFSVSINPVHSNLCASGGGDDLGYIWD 90
>SPAC4D7.03 |pop2|sud1|F-box/WD repeat protein
Pop2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 703
Score = 25.4 bits (53), Expect = 5.2
Identities = 13/37 (35%), Positives = 20/37 (54%)
Frame = +3
Query: 114 KNIMDGHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
K +++GH + F N + LISG D+T+ WD
Sbjct: 582 KYVLEGHDA--FVTLLNV-FQNRLISGSADSTIRIWD 615
>SPBC21B10.05c |pop3|wat1|WD repeat protein Pop3|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 314
Score = 25.4 bits (53), Expect = 5.2
Identities = 8/22 (36%), Positives = 15/22 (68%)
Frame = +3
Query: 159 FNPKSHHELISGGWDNTVMFWD 224
+ P+ L+S G+D+T+ FW+
Sbjct: 5 YPPQHSVLLVSSGYDHTIRFWE 26
>SPBC1306.02 ||SPBC4.08|WD repeat protein, human WDR6
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 984
Score = 25.4 bits (53), Expect = 5.2
Identities = 9/34 (26%), Positives = 17/34 (50%)
Frame = +3
Query: 129 GHTSRIFACAFNPKSHHELISGGWDNTVMFWDDR 230
GH++R++ C F P +S + W+D+
Sbjct: 235 GHSARVWRCVFLPNKEIATVSEDLTLRLWTWNDK 268
Score = 24.6 bits (51), Expect = 9.1
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -2
Query: 297 AYRNPNLLHTCELRKGNVLHMVVY 226
+Y+N NLL +L +G + ++ Y
Sbjct: 396 SYQNTNLLKAIDLHRGKIQQLLTY 419
>SPAC890.04c |||ribosome biogenesis protein Ytm1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 440
Score = 25.4 bits (53), Expect = 5.2
Identities = 11/43 (25%), Positives = 20/43 (46%)
Frame = +3
Query: 123 MDGHTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQPYATRY 251
+ GH + + + +P++ + S DNT WD R + Y
Sbjct: 351 LSGHKNLVSGLSASPENPYMFASVSHDNTCRVWDVRATSGSIY 393
>SPCC18.13 |||tRNA |Schizosaccharomyces pombe|chr 3|||Manual
Length = 421
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = +3
Query: 183 LISGGWDNTVMFWD 224
LISGG DN V WD
Sbjct: 240 LISGGGDNHVFVWD 253
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.0 bits (52), Expect = 6.9
Identities = 11/42 (26%), Positives = 20/42 (47%)
Frame = -3
Query: 311 NRFSRLIEIQTFSTHVNSEKVTCCIWLSIIPEHNSVIPTSRY 186
N S L F + + C I+ +I +H+S+ PT+ +
Sbjct: 3637 NEVSSLGYDHDFENRAQAVSMLCQIYAIVIQKHSSISPTASF 3678
>SPBC8D2.01 |gsk31||serine/threonine protein kinase
Gsk31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 381
Score = 25.0 bits (52), Expect = 6.9
Identities = 8/22 (36%), Positives = 13/22 (59%)
Frame = -2
Query: 309 PFFQAYRNPNLLHTCELRKGNV 244
PFF R+PN ++ C +G +
Sbjct: 307 PFFDELRDPNCMYHCSRDEGTI 328
>SPBC1A4.07c |||U3 snoRNP-associated protein
Sof1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 436
Score = 25.0 bits (52), Expect = 6.9
Identities = 10/32 (31%), Positives = 16/32 (50%)
Frame = +3
Query: 129 GHTSRIFACAFNPKSHHELISGGWDNTVMFWD 224
GH +++ A + K+ + SG D V WD
Sbjct: 62 GHQDGVYSLARDTKTLIDCASGSGDGAVKLWD 93
>SPBC17D11.08 |||WD repeat protein, human WDR68
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 435
Score = 25.0 bits (52), Expect = 6.9
Identities = 13/36 (36%), Positives = 17/36 (47%)
Frame = +3
Query: 129 GHTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQP 236
GH + A + P S +L + G D V WD QP
Sbjct: 313 GHKGDVNAVKWMPGSKSKLATCGDDCVVSLWDLDQP 348
>SPAC57A7.11 |mip1||WD repeat protein Mip1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1313
Score = 24.6 bits (51), Expect = 9.1
Identities = 12/37 (32%), Positives = 15/37 (40%)
Frame = +3
Query: 132 HTSRIFACAFNPKSHHELISGGWDNTVMFWDDRQPYA 242
H+S I ELIS D V WD R ++
Sbjct: 1177 HSSEIVNVEMQSSGMRELISASSDGEVKLWDIRMNHS 1213
>SPAC12B10.08c |||mitochondrial tRNA|Schizosaccharomyces pombe|chr
1|||Manual
Length = 456
Score = 24.6 bits (51), Expect = 9.1
Identities = 8/11 (72%), Positives = 10/11 (90%)
Frame = -3
Query: 173 RFWIKSTCKNS 141
RFWIK +CKN+
Sbjct: 371 RFWIKYSCKNT 381
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,208,901
Number of Sequences: 5004
Number of extensions: 48677
Number of successful extensions: 206
Number of sequences better than 10.0: 57
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 206
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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