Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6j24
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC4F11.04c |||mannosyltransferase complex subunit |Schizosacch...    29   0.65 
SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces pombe...    27   2.6  
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe...    25   6.1  

>SPCC4F11.04c |||mannosyltransferase complex subunit
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 345

 Score = 28.7 bits (61), Expect = 0.65
 Identities = 18/56 (32%), Positives = 24/56 (42%), Gaps = 5/56 (8%)
 Frame = +3

Query: 228 PGLFLCSLTDPIGAAKRSRHAHDTWKSLGVKVNWK-----CWDKSPHIQHFIYHTE 380
           P L L SL D  G     +  H TWK+  V   WK     C D  P  ++ ++  E
Sbjct: 66  PTLKLDSLNDISGEPVIPKIIHQTWKTTEVPEGWKGAQQSCIDLHPDYEYILWTDE 121


>SPBC1711.16 |||WD repeat protein Pwp1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 516

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
 Frame = +3

Query: 252 TDPIGAAKRSRHAHDTWKSLGVKVNWKCWDKSP--HIQHFIYHTEE 383
           TD + A   +R+AH+   S       K WD S    ++ F YH+++
Sbjct: 254 TDAVLALSSNRNAHNLLVSGSADTTLKLWDLSTCNCVKSFTYHSDK 299


>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 319

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 11/34 (32%), Positives = 17/34 (50%)
 Frame = +2

Query: 476 NNKKE*QVDKKETEYHIIYFFYFVLLIKIILNEH 577
           NNK+  ++D K +EY   Y   +  + K I   H
Sbjct: 166 NNKRHFRLDPKSSEYDEFYIINYASVTKSITISH 199


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,434,642
Number of Sequences: 5004
Number of extensions: 48575
Number of successful extensions: 123
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 123
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)