Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6j24
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin recep...    30   1.4  
AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal daue...    30   1.4  
AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical ...    27   7.4  

>AF012437-1|AAC47715.1| 1846|Caenorhabditis elegans insulin receptor
            homolog protein.
          Length = 1846

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 243  CSLTDPIGAAKRSRHAHDTWKSLGVKVNWKCWDKSPHI 356
            CS++   GA KR++H  D  K L   + W+  + S  +
Sbjct: 1055 CSISHRAGALKRTKHITDIDKVLNETIEWRFMNNSQQV 1092


>AC084196-6|AAK29947.2| 1843|Caenorhabditis elegans Abnormal dauer
            formation protein 2 protein.
          Length = 1843

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/38 (31%), Positives = 20/38 (52%)
 Frame = +3

Query: 243  CSLTDPIGAAKRSRHAHDTWKSLGVKVNWKCWDKSPHI 356
            CS++   GA KR++H  D  K L   + W+  + S  +
Sbjct: 1052 CSISHRAGALKRTKHITDIDKVLNETIEWRFMNNSQQV 1089


>AF106592-4|AAK21366.1|  786|Caenorhabditis elegans Hypothetical
           protein D1037.1 protein.
          Length = 786

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +3

Query: 243 CSLTDPIGAAKRSRHAHDTWKSLGVKVNWKCWDKS 347
           C  TD +G   +  H H + KS  V+   K W  S
Sbjct: 39  CDQTDFVGKRPKKHHRHKSKKSKKVRRRSKTWSSS 73


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,466,574
Number of Sequences: 27780
Number of extensions: 272502
Number of successful extensions: 636
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 623
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 636
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)