Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6j24
         (582 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    24   1.3  
AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    23   2.9  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   6.7  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    21   8.9  

>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 23.8 bits (49), Expect = 1.3
 Identities = 10/32 (31%), Positives = 16/32 (50%)
 Frame = -2

Query: 158 QFHMKDCVSSESFLEDLILREHSIWKSNGDFI 63
           +F    C+ S +F E   L +  +W S  +FI
Sbjct: 51  RFEAIQCLQSSAFKEIKTLPDRGMWSSKIEFI 82


>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 9/26 (34%), Positives = 14/26 (53%)
 Frame = -2

Query: 140 CVSSESFLEDLILREHSIWKSNGDFI 63
           C+ S +F E   L +  +W S  +FI
Sbjct: 4   CLQSSAFKEIKTLPDRGMWSSKIEFI 29


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 21.4 bits (43), Expect = 6.7
 Identities = 10/37 (27%), Positives = 17/37 (45%)
 Frame = +1

Query: 49  HQPMCMKSPLDFQMLCSLRIRSSRKLSELTQSFI*NC 159
           H+P+C  +   +   C L   +    S LT+S +  C
Sbjct: 114 HRPVCASNGKIYANHCELHRAACHSGSSLTKSRLMRC 150


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
            receptor protein.
          Length = 1040

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +1

Query: 184  TCVQHKFTTTHLVERRDCS 240
            TC Q+K    H+    DCS
Sbjct: 948  TCDQNKAVKKHITTTIDCS 966


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 161,412
Number of Sequences: 438
Number of extensions: 3196
Number of successful extensions: 5
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)