Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6j19
         (465 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_04_0430 + 17653553-17654285,17654305-17654627,17654795-176549...    29   2.4  
05_01_0051 - 345125-345693,345833-346925                               28   4.3  
01_05_0387 - 21695277-21695351,21696186-21696228,21696325-216964...    28   4.3  
12_02_1187 - 26793455-26793496,26793599-26793717,26793813-267939...    27   7.4  
03_06_0346 - 33287761-33287895,33288418-33288489,33288577-332886...    27   7.4  
11_06_0520 + 24539403-24539603,24539919-24540325,24541002-245411...    27   9.8  

>11_04_0430 +
           17653553-17654285,17654305-17654627,17654795-17654921,
           17655123-17655338,17655463-17655494
          Length = 476

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 10/13 (76%), Positives = 11/13 (84%)
 Frame = -1

Query: 231 VVHGGLGLQHVPH 193
           VV GGLG QH+PH
Sbjct: 241 VVQGGLGFQHIPH 253


>05_01_0051 - 345125-345693,345833-346925
          Length = 553

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 12/16 (75%), Positives = 12/16 (75%)
 Frame = +1

Query: 73  HFYAATTLLYAERNLF 120
           HFYAA TLL   RNLF
Sbjct: 179 HFYAAATLLPCARNLF 194


>01_05_0387 -
           21695277-21695351,21696186-21696228,21696325-21696454,
           21696812-21697028,21697202-21697248,21698132-21698228,
           21698637-21698687,21698788-21698919,21699345-21699499,
           21700461-21700534,21700566-21700730,21701368-21701420
          Length = 412

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 18/54 (33%), Positives = 27/54 (50%)
 Frame = +1

Query: 145 TRRLVSLNCGRADDDQMRYVLQTEPTVHHTLLEKLMKQELRPYRNSGEVYCTDF 306
           T R +S    RA  D +R++L    ++H  ++EKL K  L       E+YC  F
Sbjct: 264 THRPLSEMMIRAATDDVRFLL----SIHEKMMEKLSKVSLWRLSVRSELYCRCF 313


>12_02_1187 -
           26793455-26793496,26793599-26793717,26793813-26793939,
           26794382-26794520,26794565-26794833,26794923-26795056,
           26795630-26795750
          Length = 316

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 187 DQMRYVLQTEPTVHHTLLEKLMKQELRPYRNSGEVY 294
           +Q+R+V+Q  PT  H  LE L+ ++   Y     ++
Sbjct: 158 EQLRHVVQHSPTCLHCALELLLNEQESMYERYAALF 193


>03_06_0346 -
           33287761-33287895,33288418-33288489,33288577-33288645,
           33288782-33288847,33289025-33289228,33291194-33291445
          Length = 265

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/52 (28%), Positives = 23/52 (44%), Gaps = 1/52 (1%)
 Frame = +3

Query: 18  PAPRRPSDSKV*FRSRRGPFLCGHDAAVR-RKESVQDRPDYKLDAATGFSEL 170
           P P  P    +  R+RRG     H  A R R+E + +R     D   G +++
Sbjct: 124 PPPEPPKQDYIHVRARRGQATDSHSLAERARREKISERMKILQDLVPGCNKV 175


>11_06_0520 +
           24539403-24539603,24539919-24540325,24541002-24541187,
           24541550-24541742,24541945-24542021,24542400-24542550,
           24543229-24543462,24543577-24543591
          Length = 487

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 10/30 (33%), Positives = 18/30 (60%)
 Frame = +1

Query: 121 KIGQTTNLTRRLVSLNCGRADDDQMRYVLQ 210
           ++G+  +L R L  ++C R  DD + Y+ Q
Sbjct: 285 EVGRGCSLLRSLYLVDCSRISDDALCYIAQ 314


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,194,003
Number of Sequences: 37544
Number of extensions: 188345
Number of successful extensions: 554
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 554
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)