Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6j16
         (487 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q46B09 Cluster: Putative uncharacterized protein; n=1; ...    33   4.5  
UniRef50_Q8IDC0 Cluster: Zinc finger protein; n=1; Plasmodium fa...    32   7.9  

>UniRef50_Q46B09 Cluster: Putative uncharacterized protein; n=1;
           Methanosarcina barkeri str. Fusaro|Rep: Putative
           uncharacterized protein - Methanosarcina barkeri (strain
           Fusaro / DSM 804)
          Length = 156

 Score = 32.7 bits (71), Expect = 4.5
 Identities = 16/32 (50%), Positives = 22/32 (68%), Gaps = 2/32 (6%)
 Frame = +3

Query: 390 DTIDKSELNTSDITESTANES--NEQILNDAN 479
           + IDKS +N S+I ES  NES  NE  +N++N
Sbjct: 35  NNIDKSNINESNINESNINESNINESNINESN 66


>UniRef50_Q8IDC0 Cluster: Zinc finger protein; n=1; Plasmodium
           falciparum 3D7|Rep: Zinc finger protein - Plasmodium
           falciparum (isolate 3D7)
          Length = 613

 Score = 31.9 bits (69), Expect = 7.9
 Identities = 17/40 (42%), Positives = 27/40 (67%), Gaps = 1/40 (2%)
 Frame = +3

Query: 369 VTENEARDTIDKSELNTSDITESTANESN-EQILNDANAS 485
           +T NEA +T + +E N S++T + AN+SN   + N+AN S
Sbjct: 147 ITANEANETNEANEANKSNLT-NEANKSNVTNLTNEANKS 185


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 406,670,253
Number of Sequences: 1657284
Number of extensions: 7202661
Number of successful extensions: 15221
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 14846
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15218
length of database: 575,637,011
effective HSP length: 94
effective length of database: 419,852,315
effective search space used: 28130105105
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)