Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6j16
         (487 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces pom...    26   2.6  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    25   6.1  
SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces po...    25   6.1  
SPBC9B6.11c |||CCR4/nocturin family endoribonuclease|Schizosacch...    25   6.1  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    25   6.1  

>SPAC23D3.06c |nup146||nucleoporin Nup146|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1325

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 13/43 (30%), Positives = 25/43 (58%)
 Frame = -1

Query: 274 IQWLK*KKF*IYRHFQTRSMSVNSDKQVNNAVCFMIS*QKNKH 146
           I W++ ++F ++ +    S+S  SD+  + + CF+IS   N H
Sbjct: 253 ISWIENREFVVF-YSPLTSLSNESDEPPHESECFVISVGMNGH 294


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = +2

Query: 266 PLDHVVHRFPLLLYIWY*VTXD 331
           P+DH++   P L+  WY ++ D
Sbjct: 334 PVDHLISALPQLMPRWYSISND 355


>SPAC20G4.08 ||SPAC4F10.01|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1076

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 8/23 (34%), Positives = 17/23 (73%)
 Frame = -1

Query: 475 ASFKICSFDSFAVDSVISEVLSS 407
           +S+   +FD+  +DS++S +L+S
Sbjct: 713 SSYSASTFDAIPMDSIVSNILAS 735


>SPBC9B6.11c |||CCR4/nocturin family
           endoribonuclease|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 502

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/46 (28%), Positives = 24/46 (52%)
 Frame = +3

Query: 342 EEKITACEAVTENEARDTIDKSELNTSDITESTANESNEQILNDAN 479
           EEK  + +   ++   D  +    +TS + ESTA+   ++IL+  N
Sbjct: 341 EEKNASTKTENDSNEDDKEECQSSSTSSVPESTASTPKKRILHVQN 386


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
            subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 336  SPEEKITACEAVTENEARDTIDKSELNTSDITESTANESN 455
            SP    T+ +   EN+A +  DK++++  D TE T +  N
Sbjct: 1474 SPSPVFTSVKQTAENDADNEDDKTDMD--DQTEETLDADN 1511


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,779,425
Number of Sequences: 5004
Number of extensions: 33558
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 188065158
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)