Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6j16
         (487 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1815 - 40064351-40064887,40064987-40065634,40065834-400658...    28   3.5  
08_02_1463 - 27313436-27314146                                         27   6.0  
08_02_1060 + 24007980-24008662,24010078-24010219,24010293-240115...    27   6.0  
08_02_1057 + 23995782-23996446,23998026-23998167,23998242-239994...    27   6.0  
05_02_0065 - 6276439-6276462,6276716-6276781,6277035-6277100,627...    27   6.0  
02_02_0028 + 6196453-6196512,6196936-6197320,6197843-6197925,619...    27   8.0  

>01_06_1815 -
           40064351-40064887,40064987-40065634,40065834-40065890,
           40065921-40065941,40066714-40066941
          Length = 496

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = -1

Query: 460 CSF---DSFAVDSVISEVLSSDLSIVSRASFSVTASQAVIFSSGLPIXSHL 317
           CSF   DS AVDS+ S  L +  + +     +   SQ V+F+S     +HL
Sbjct: 143 CSFKHDDSVAVDSLSSSDLQNQTNRIEHDLVNTVESQLVLFASDNQQLTHL 193


>08_02_1463 - 27313436-27314146
          Length = 236

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 19/51 (37%), Positives = 26/51 (50%), Gaps = 2/51 (3%)
 Frame = +3

Query: 339 PEEKITACEAVTENEARDTIDKSELNTSDITESTANESNEQIL--NDANAS 485
           P+ +  A EAV E + R +   +   TS    STA  S+  +L  ND NAS
Sbjct: 124 PDVQRAASEAVAEFQRRGSTAATATATSGDAASTAPPSSSPVLSPNDDNAS 174


>08_02_1060 +
           24007980-24008662,24010078-24010219,24010293-24011537,
           24012453-24013040
          Length = 885

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 381 EARDTIDKSELNTSDITESTANESNEQILNDANAS 485
           ++RD    S LNT     +TAN      LND N S
Sbjct: 572 KSRDVNLNSRLNTISFPIATANNETSTALNDVNRS 606


>08_02_1057 +
           23995782-23996446,23998026-23998167,23998242-23999486,
           23999521-23999529
          Length = 686

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/35 (40%), Positives = 17/35 (48%)
 Frame = +3

Query: 381 EARDTIDKSELNTSDITESTANESNEQILNDANAS 485
           ++RD    S LNT     +TAN      LND N S
Sbjct: 566 KSRDVNLNSRLNTISFPIATANNETSTALNDVNRS 600


>05_02_0065 -
           6276439-6276462,6276716-6276781,6277035-6277100,
           6277384-6277449,6277698-6277745,6278233-6278292,
           6278418-6278483,6278569-6278652,6278736-6278801,
           6278878-6279036,6279106-6279222,6279305-6279397,
           6279697-6279900,6280013-6280161,6280234-6280492
          Length = 508

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 14/50 (28%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = +3

Query: 330 MGSPEEKITACEAVTE--NEARDTIDKSELNTSDITESTANESNEQILND 473
           + +P E+ T C  V E   +  D + ++  +T D     A E NE+  +D
Sbjct: 31  LATPSEQETICSDVQEGNEDTNDDVGEANEDTDDDASMNAGEGNEESDDD 80


>02_02_0028 +
           6196453-6196512,6196936-6197320,6197843-6197925,
           6198060-6198183,6198404-6198523,6198595-6198755,
           6198999-6199157,6199272-6199434,6199604-6199729,
           6199775-6199900,6200400-6200764,6201204-6201404,
           6201685-6201794,6201919-6202003,6202553-6202681,
           6202763-6202868,6202984-6203072,6203172-6203474
          Length = 964

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 14/46 (30%), Positives = 25/46 (54%), Gaps = 1/46 (2%)
 Frame = +2

Query: 122 ELNYRFRQVFVLLSRYHKTDCIVNLF-ITIDGHTASLEVAVNSKFL 256
           + N  FR+  V+  R  KT+C + LF + +      L++A+N + L
Sbjct: 8   QTNALFRKSLVIQRRAGKTNCCIVLFPLLLFSAIGGLQIAINVEML 53


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,596,830
Number of Sequences: 37544
Number of extensions: 186640
Number of successful extensions: 339
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 335
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 339
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 999806640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)