Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6j10
         (638 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q4UGP5 Cluster: Putative uncharacterized protein; n=1; ...    38   0.20 
UniRef50_Q7K4P2 Cluster: LD30246p; n=2; Drosophila melanogaster|...    36   1.1  
UniRef50_Q4G0Z0 Cluster: Putative uncharacterized protein; n=3; ...    35   1.4  
UniRef50_Q54VS4 Cluster: PA14 domain-containing protein; n=1; Di...    35   1.9  
UniRef50_A5KDU3 Cluster: Putative uncharacterized protein; n=1; ...    34   2.5  
UniRef50_A2F851 Cluster: Putative uncharacterized protein; n=1; ...    34   2.5  
UniRef50_Q0CI54 Cluster: NADH-ubiquinone oxidoreductase 30.4 kDa...    34   3.3  
UniRef50_Q8LNR1 Cluster: Putative uncharacterized protein OSJNBa...    33   4.4  
UniRef50_Q0BW90 Cluster: Thymidylate kinase; n=2; Acetobacterace...    33   5.8  
UniRef50_A6QC60 Cluster: Putative uncharacterized protein; n=1; ...    33   7.7  
UniRef50_A4ACS0 Cluster: Magnesium-chelatase, 60 kDa subunit; n=...    33   7.7  
UniRef50_Q9P2Q2 Cluster: FERM domain-containing protein 4A; n=32...    33   7.7  

>UniRef50_Q4UGP5 Cluster: Putative uncharacterized protein; n=1;
           Theileria annulata|Rep: Putative uncharacterized protein
           - Theileria annulata
          Length = 1500

 Score = 37.9 bits (84), Expect = 0.20
 Identities = 22/64 (34%), Positives = 30/64 (46%)
 Frame = +2

Query: 374 NNNFPTVSNIILHFCVSFLMQTIYFIGDENSSEEGIVAGSSHHHDDIVPLDGPINAGEDA 553
           N  +  VS IIL+  V+FL Q +  + DEN S E +    SHH      +    N  +  
Sbjct: 243 NKIYNIVSEIILNLMVTFLSQILTVLADENYSLENVRRPISHHSTHFSHITHSSNKHKSL 302

Query: 554 PPSG 565
           P SG
Sbjct: 303 PYSG 306


>UniRef50_Q7K4P2 Cluster: LD30246p; n=2; Drosophila
           melanogaster|Rep: LD30246p - Drosophila melanogaster
           (Fruit fly)
          Length = 224

 Score = 35.5 bits (78), Expect = 1.1
 Identities = 18/79 (22%), Positives = 32/79 (40%)
 Frame = +2

Query: 209 YEIYCGHCLGQPEGSATVYNKTLTYFEIYCGHCLGQPEGSATGRICEDMLRKLSLNNNFP 388
           + ++C  C    +    V         + CG CLGQ        +C  +L+ + +N + P
Sbjct: 15  FRVHCNKCFRHRKTDPAVPFHLTQCRHVICGPCLGQSSLEKNCPLCGQVLKAIQINRDMP 74

Query: 389 TVSNIILHFCVSFLMQTIY 445
           T  ++  +F      Q IY
Sbjct: 75  T--SVANYFADPLRFQQIY 91


>UniRef50_Q4G0Z0 Cluster: Putative uncharacterized protein; n=3;
           Catarrhini|Rep: Putative uncharacterized protein - Homo
           sapiens (Human)
          Length = 603

 Score = 35.1 bits (77), Expect = 1.4
 Identities = 21/42 (50%), Positives = 24/42 (57%)
 Frame = -1

Query: 329 QSPQVARDSDRSISQNKLMSYCIQWQSPQVARDSDRSISHNK 204
           +SP  ARD  RS S NK    C + +SP  ARD  RS S NK
Sbjct: 425 RSPYKARDRSRSRSPNKARD-CSRSRSPYKARDRSRSRSPNK 465



 Score = 33.1 bits (72), Expect = 5.8
 Identities = 20/42 (47%), Positives = 24/42 (57%)
 Frame = -1

Query: 329 QSPQVARDSDRSISQNKLMSYCIQWQSPQVARDSDRSISHNK 204
           +SP  ARD  RS S NK   +  + +SP  ARD  RS S NK
Sbjct: 449 RSPYKARDRSRSRSPNKARDHS-RSRSPNKARDRSRSRSPNK 489


>UniRef50_Q54VS4 Cluster: PA14 domain-containing protein; n=1;
           Dictyostelium discoideum AX4|Rep: PA14 domain-containing
           protein - Dictyostelium discoideum AX4
          Length = 750

 Score = 34.7 bits (76), Expect = 1.9
 Identities = 23/73 (31%), Positives = 34/73 (46%), Gaps = 5/73 (6%)
 Frame = +2

Query: 149 YTAVTVSGNLRAL---PLYTLAYYEIYCGHCLGQPEGSATVYNKTLTYFEI--YCGHCLG 313
           +TA T +  L+ +   PL T   Y++   +C  +  GS+   + TL  F +  YCG C G
Sbjct: 226 HTAETANIKLKDITNPPLQTNKIYDLDFFYCERRATGSSIQLSTTLEIFCVDDYCGVCNG 285

Query: 314 QPEGSATGRICED 352
                 T   CED
Sbjct: 286 DGTSCCTSSTCED 298


>UniRef50_A5KDU3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium vivax|Rep: Putative uncharacterized protein -
           Plasmodium vivax
          Length = 747

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 17/50 (34%), Positives = 23/50 (46%)
 Frame = +2

Query: 452 GDENSSEEGIVAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIGG 601
           G E   EEG   G      +  P++   N  E+AP    AV E +D+ GG
Sbjct: 175 GQEEGQEEGQEEGQEEGQQEEQPVEQVANPDEEAPHDAPAVWEQNDEEGG 224


>UniRef50_A2F851 Cluster: Putative uncharacterized protein; n=1;
           Trichomonas vaginalis G3|Rep: Putative uncharacterized
           protein - Trichomonas vaginalis G3
          Length = 372

 Score = 34.3 bits (75), Expect = 2.5
 Identities = 15/30 (50%), Positives = 20/30 (66%)
 Frame = +2

Query: 188 PLYTLAYYEIYCGHCLGQPEGSATVYNKTL 277
           P++ L Y   YC HC+G PEG +  +NKTL
Sbjct: 29  PIFNLCYSH-YCPHCVGLPEGFSN-FNKTL 56


>UniRef50_Q0CI54 Cluster: NADH-ubiquinone oxidoreductase 30.4 kDa
           subunit, mitochondrial; n=3; Eukaryota|Rep:
           NADH-ubiquinone oxidoreductase 30.4 kDa subunit,
           mitochondrial - Aspergillus terreus (strain NIH 2624)
          Length = 688

 Score = 33.9 bits (74), Expect = 3.3
 Identities = 22/54 (40%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = +2

Query: 449 IGDENSSEE--GIVAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIGGV 604
           +  E+SSEE  GI +GS    +D    DG +  G D     EA  ED  D GGV
Sbjct: 452 VSGEDSSEEWGGIESGSDAGSEDFSQFDGLLAPGSDDEDGDEAASEDASD-GGV 504


>UniRef50_Q8LNR1 Cluster: Putative uncharacterized protein
           OSJNBa0042E19.25; n=1; Oryza sativa (japonica
           cultivar-group)|Rep: Putative uncharacterized protein
           OSJNBa0042E19.25 - Oryza sativa subsp. japonica (Rice)
          Length = 313

 Score = 33.5 bits (73), Expect = 4.4
 Identities = 30/105 (28%), Positives = 44/105 (41%), Gaps = 5/105 (4%)
 Frame = +2

Query: 287 EIYCGHCLGQPEGSATGRICEDMLRKL-SLNNNFPTVSNIILHFCVSFLMQTIYFIG-DE 460
           E + G  LG+PE   T      +  ++    +    +S++ +      L     F G   
Sbjct: 195 EAWDGDELGEPEREMTTSSAASLAPRIWQAASPLLALSSLAIAVTRPALCHYFLFFGFSP 254

Query: 461 NSSEEGIVAGSSHHHDDIVPLDGPINAGEDAPPSG---EAVLEDD 586
           +SS  G VAG    H D+  + G +  GED P  G   E  LEDD
Sbjct: 255 SSSALGSVAGELQAHSDVGMVAGVVTGGED-PDKGNPVETFLEDD 298


>UniRef50_Q0BW90 Cluster: Thymidylate kinase; n=2;
           Acetobacteraceae|Rep: Thymidylate kinase - Granulobacter
           bethesdensis (strain ATCC BAA-1260 / CGDNIH1)
          Length = 679

 Score = 33.1 bits (72), Expect = 5.8
 Identities = 17/40 (42%), Positives = 23/40 (57%)
 Frame = +2

Query: 464 SSEEGIVAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLED 583
           SSE G    ++H  DD VPL  P  A ++A PSG  ++ D
Sbjct: 515 SSETGAFYTTAHDADD-VPLTRPCTASDNAVPSGNGMMAD 553


>UniRef50_A6QC60 Cluster: Putative uncharacterized protein; n=1;
           Sulfurovum sp. NBC37-1|Rep: Putative uncharacterized
           protein - Sulfurovum sp. (strain NBC37-1)
          Length = 226

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 2/63 (3%)
 Frame = +2

Query: 365 LSLNNNFPT--VSNIILHFCVSFLMQTIYFIGDENSSEEGIVAGSSHHHDDIVPLDGPIN 538
           ++L ++FP   +S II+H   S L     +I   +     +++    HHD++  +  P+ 
Sbjct: 35  MALRSSFPANGMSGIIVHNYGSDLQAITAYIAQTSKGHAKVISRDIIHHDELPTIKTPVR 94

Query: 539 AGE 547
           AG+
Sbjct: 95  AGD 97


>UniRef50_A4ACS0 Cluster: Magnesium-chelatase, 60 kDa subunit; n=1;
           Congregibacter litoralis KT71|Rep: Magnesium-chelatase,
           60 kDa subunit - Congregibacter litoralis KT71
          Length = 615

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = +2

Query: 452 GDENSSEEGIVAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDDD 592
           GDE  +E+ +        DD  P D       D+PP  +A  E +DD
Sbjct: 265 GDEQDAEDDVEESPDDSADDSQPPDNETPDAPDSPPPSDAQRESEDD 311


>UniRef50_Q9P2Q2 Cluster: FERM domain-containing protein 4A; n=32;
           Euteleostomi|Rep: FERM domain-containing protein 4A -
           Homo sapiens (Human)
          Length = 1024

 Score = 32.7 bits (71), Expect = 7.7
 Identities = 17/69 (24%), Positives = 37/69 (53%), Gaps = 1/69 (1%)
 Frame = +2

Query: 332 TGRICEDMLRKLSLNNNFPTVSN-IILHFCVSFLMQTIYFIGDENSSEEGIVAGSSHHHD 508
           TG +    L +  L ++FP  S  ++L+FCV F +++I ++ D  + E   +   S  + 
Sbjct: 54  TGHLNWLQLDRRVLEHDFPKKSGPVVLYFCVRFYIESISYLKDNATIELFFLNAKSCIYK 113

Query: 509 DIVPLDGPI 535
           +++ +D  +
Sbjct: 114 ELIDVDSEV 122


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 628,841,898
Number of Sequences: 1657284
Number of extensions: 12776773
Number of successful extensions: 32714
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 25083
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 32599
length of database: 575,637,011
effective HSP length: 97
effective length of database: 414,880,463
effective search space used: 47711253245
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)