Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6j10
         (638 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC3D6.04c |mad1||mitotic spindle checkpoint protein Mad1|Schiz...    26   5.3  
SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr 1...    25   7.0  
SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces po...    25   7.0  
SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr 1||...    25   9.2  

>SPBC3D6.04c |mad1||mitotic spindle checkpoint protein
           Mad1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 689

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 4/33 (12%)
 Frame = -3

Query: 561 DGGASSPALIGPSRGT----MSSWWCDEPATIP 475
           DG +S+  L+G   G     +  +WCDE  TIP
Sbjct: 642 DGESSTMKLVGNPSGPEFERLIRFWCDERKTIP 674


>SPAC23G3.12c |||serine protease |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 996

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 16/57 (28%), Positives = 26/57 (45%)
 Frame = +2

Query: 308 LGQPEGSATGRICEDMLRKLSLNNNFPTVSNIILHFCVSFLMQTIYFIGDENSSEEG 478
           LG P  +   + C   + KL++ N  PT +NII  F        ++  G   S ++G
Sbjct: 496 LGDPLPAEPSKPCTTSIPKLNVENFGPT-ANIINCFVKVLYYMPLHLDGSRKSRKKG 551


>SPBC342.02 |||glutaminyl-tRNA synthetase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 811

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 561 DGGASSPALIGPSRGTMSSWWCDEPATIPSSEL 463
           D  ++SP LI  +R   + + CD PA +   EL
Sbjct: 692 DKESNSPVLIAETRLFNNLFKCDNPAALKEQEL 724


>SPAC31A2.16 |gef2||RhoGEF Gef2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1101

 Score = 25.0 bits (52), Expect = 9.2
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 367 VTEQQLPNGQQHNIAFLCVIFN 432
           VT + L NGQ H I +  ++FN
Sbjct: 463 VTREFLKNGQLHLIPYTLILFN 484


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,525,052
Number of Sequences: 5004
Number of extensions: 51435
Number of successful extensions: 134
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 134
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 285732116
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)