Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6j10
(638 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_02_0279 - 8507603-8507620,8508040-8508060,8508613-8508835,850... 31 0.58
11_03_0078 - 9662677-9663642,9666589-9666747 31 0.77
09_06_0048 + 20477076-20478547,20478643-20478722,20478880-204788... 30 1.3
03_01_0319 - 2499470-2499598,2499681-2499746,2499830-2499937,250... 30 1.8
07_03_1391 + 26234647-26235026,26235112-26235226,26235345-262354... 29 3.1
11_01_0412 + 3131673-3131903,3133192-3133971 29 4.1
08_01_0177 + 1504472-1505033,1505035-1506647 29 4.1
05_05_0127 - 22580720-22580808,22580936-22580987,22581703-225819... 29 4.1
02_05_0936 - 32875479-32875573,32875794-32876028,32877752-328778... 28 5.4
11_04_0474 + 18162538-18163731,18163800-18163855,18163951-181640... 28 7.2
05_04_0438 + 21244735-21244782,21245089-21245274,21245307-212453... 28 7.2
08_01_0252 + 2060214-2060587,2060710-2061166 27 9.5
03_02_0463 - 8673313-8673639,8674040-8674126,8674710-8674790,867... 27 9.5
>02_02_0279 -
8507603-8507620,8508040-8508060,8508613-8508835,
8509204-8509553,8509631-8509729,8509811-8510105,
8510200-8510405,8510498-8510689,8510766-8511163,
8511258-8511444,8511473-8511528,8511800-8511872,
8512012-8512872,8514353-8514778
Length = 1134
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 449 IGDENSSEEGIVAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIG 598
+ +E +EE + H +D VPL +N E+ P E +ED ++G
Sbjct: 311 VREEVHAEENVPLREEVHAEDNVPLREEVNVEENVPVREEGDVEDGREVG 360
>11_03_0078 - 9662677-9663642,9666589-9666747
Length = 374
Score = 31.1 bits (67), Expect = 0.77
Identities = 15/50 (30%), Positives = 25/50 (50%)
Frame = +2
Query: 449 IGDENSSEEGIVAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDDDIG 598
+ +E +EE + H +D VPL +N E+ P E +ED ++G
Sbjct: 222 VREEVHAEENVPLREEVHVEDNVPLREEVNVEENVPVREEGDVEDGREVG 271
>09_06_0048 +
20477076-20478547,20478643-20478722,20478880-20478893,
20480164-20481199,20481275-20481402,20481673-20481732,
20481774-20481878,20481971-20482055,20482315-20482470,
20482562-20482831,20482877-20483671,20483844-20483903,
20484062-20485134
Length = 1777
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/45 (31%), Positives = 24/45 (53%)
Frame = +2
Query: 437 TIYFIGDENSSEEGIVAGSSHHHDDIVPLDGPINAGEDAPPSGEA 571
T+ GD+N + E A + D+ + +DG I AG+ +G+A
Sbjct: 238 TVGLSGDDNVANEAAAAAAGGADDEDLKMDGVITAGDKDVENGKA 282
>03_01_0319 -
2499470-2499598,2499681-2499746,2499830-2499937,
2500125-2500259,2500763-2500840,2500994-2501044,
2501805-2501879,2501975-2502037,2503048-2503137,
2503215-2503406,2503498-2503591,2503776-2504279,
2504415-2504614,2504712-2504756,2505023-2505082,
2505476-2505520,2505858-2505941,2506121-2506318,
2506960-2507667
Length = 974
Score = 29.9 bits (64), Expect = 1.8
Identities = 13/39 (33%), Positives = 22/39 (56%)
Frame = -1
Query: 440 LFALKMTHRNAILCC*PLGSCCSVTISVACLHKFFQWQS 324
LFA + + ++ C LG ++ +SV + + FQWQS
Sbjct: 744 LFAAALLEKQIVVICSNLGVLSAIVLSVMPMIRPFQWQS 782
>07_03_1391 +
26234647-26235026,26235112-26235226,26235345-26235410,
26235519-26235607,26235717-26235807,26235917-26236063,
26236160-26236252,26236373-26236474,26236581-26237255
Length = 585
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/43 (37%), Positives = 22/43 (51%), Gaps = 4/43 (9%)
Frame = -1
Query: 281 KLMSYCIQWQSPQVARDSDRSISHNKLMY----TVAEPSGCPR 165
KL+S CI++ PQ D + I K MY + + SG PR
Sbjct: 236 KLLSQCIKYLGPQEREDYEVVIEDGKFMYKNSREILDTSGGPR 278
>11_01_0412 + 3131673-3131903,3133192-3133971
Length = 336
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/43 (39%), Positives = 21/43 (48%), Gaps = 1/43 (2%)
Frame = +2
Query: 188 PLY-TLAYYEIYCGHCLGQPEGSATVYNKTLTYFEIYCGHCLG 313
PL+ TLAY + C HCL +GS + EI C C G
Sbjct: 85 PLFATLAYAPVICTHCL--HDGSEQNEDNDENEVEIICNTCNG 125
>08_01_0177 + 1504472-1505033,1505035-1506647
Length = 724
Score = 28.7 bits (61), Expect = 4.1
Identities = 12/36 (33%), Positives = 17/36 (47%)
Frame = +2
Query: 482 VAGSSHHHDDIVPLDGPINAGEDAPPSGEAVLEDDD 589
V H +DD P++ P + G P GEA D +
Sbjct: 211 VTEEGHAYDDNEPVESPASRGGGEPGGGEAAANDGE 246
>05_05_0127 -
22580720-22580808,22580936-22580987,22581703-22581908,
22582019-22582152,22582239-22582369,22583333-22583392,
22583615-22583755,22583880-22584347,22584524-22584686,
22585373-22585476,22585755-22585853,22586177-22586281,
22586516-22586596,22587168-22587986,22588497-22588553
Length = 902
Score = 28.7 bits (61), Expect = 4.1
Identities = 16/61 (26%), Positives = 25/61 (40%)
Frame = -1
Query: 344 KFFQWQSPQVARDSDRSISQNKLMSYCIQWQSPQVARDSDRSISHNKLMYTVAEPSGCPR 165
KFFQ + S R + K+ SY Q Q+ + DSD+ K + + P
Sbjct: 484 KFFQSHHATANKVSQRPAKKQKISSYSDQMQNGNASSDSDKEQDLTKYYASATALANSPE 543
Query: 164 Q 162
+
Sbjct: 544 E 544
>02_05_0936 -
32875479-32875573,32875794-32876028,32877752-32877848,
32878863-32878927,32879506-32879571,32879735-32879842,
32880169-32880303,32880582-32880647,32881172-32881222,
32881312-32881386,32881834-32881896,32882694-32882783,
32882903-32883100,32883189-32883315,32883482-32884100,
32884228-32884265,32884651-32884718,32885056-32885100,
32885243-32885302,32885510-32885593,32885677-32885868,
32887361-32887663
Length = 959
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/39 (33%), Positives = 21/39 (53%)
Frame = -1
Query: 440 LFALKMTHRNAILCC*PLGSCCSVTISVACLHKFFQWQS 324
LFA + + I+ C LG + +S+ L + +QWQS
Sbjct: 612 LFAAALLEKQIIIVCSNLGMLSASVLSIIPLIRPYQWQS 650
>11_04_0474 + 18162538-18163731,18163800-18163855,18163951-18164011,
18164107-18165495,18166024-18166635,18166706-18166852,
18166941-18167209,18167322-18167412,18167500-18167757,
18168376-18168450,18168937-18168945
Length = 1386
Score = 27.9 bits (59), Expect = 7.2
Identities = 10/34 (29%), Positives = 18/34 (52%)
Frame = +2
Query: 461 NSSEEGIVAGSSHHHDDIVPLDGPINAGEDAPPS 562
N ++ + AG + +DD GP+ A + PP+
Sbjct: 1015 NKADPRLAAGQNESNDDAATSTGPVTAPDAVPPA 1048
>05_04_0438 +
21244735-21244782,21245089-21245274,21245307-21245384,
21245385-21245678,21246137-21246262,21246935-21247168,
21247534-21248061
Length = 497
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/48 (29%), Positives = 25/48 (52%)
Frame = +2
Query: 401 IILHFCVSFLMQTIYFIGDENSSEEGIVAGSSHHHDDIVPLDGPINAG 544
++ FCV + T+ FI ++ + GIV +SH ++ P+N G
Sbjct: 95 LLSFFCVHLQVLTLLFI--TSAQDPGIVPRASHPPEEEFAYGNPLNGG 140
>08_01_0252 + 2060214-2060587,2060710-2061166
Length = 276
Score = 27.5 bits (58), Expect = 9.5
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)
Frame = +2
Query: 287 EIYCGHCLGQPEGSATGRICEDML----RKLSLNNNFPTVSNIILHFCVSFLMQTIYFIG 454
E++ G L Q G +G C+ L +++ N N+ + S I +C + FIG
Sbjct: 84 EVFYG--LAQCRGDVSGGDCDACLAQAAKQMVSNCNYTSDSRIWYEYCFMRYYSSYNFIG 141
Query: 455 DENSSEEGIV 484
D ++ E+ V
Sbjct: 142 DVDTREDASV 151
>03_02_0463 -
8673313-8673639,8674040-8674126,8674710-8674790,
8674896-8675048,8675129-8675185,8675293-8675569,
8675634-8675749,8676372-8676523,8676627-8676816,
8676935-8677345
Length = 616
Score = 27.5 bits (58), Expect = 9.5
Identities = 16/40 (40%), Positives = 21/40 (52%)
Frame = +1
Query: 331 HWKNL*RHATEIVTEQQLPNGQQHNIAFLCVIFNANNLFY 450
HW NL RHAT TE +G+ L + N +N+FY
Sbjct: 257 HWVNLDRHAT---TEDAFQDGKSRLNLLLSKVHN-SNVFY 292
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,234,150
Number of Sequences: 37544
Number of extensions: 363538
Number of successful extensions: 1003
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 801
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1002
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1573040476
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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