Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6j09
         (663 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP16F5.05c |||ribosome biogenesis protein Nop8|Schizosaccharom...    45   9e-06
SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual        40   2e-04
SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|ch...    31   0.15 
SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex s...    31   0.15 
SPCP1E11.10 |||ankyrin repeat protein, unknown biological role|S...    30   0.34 
SPBC725.16 |res1|sct1|MBF transcription factor complex subunit R...    27   2.4  
SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr...    27   3.2  
SPAC589.11 |mug82||translation release factor |Schizosaccharomyc...    26   4.2  
SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit...    26   5.6  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   7.4  
SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyc...    25   7.4  
SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyce...    25   7.4  
SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces po...    25   7.4  
SPCC1393.02c |||non-specific DNA binding protein Spt2 |Schizosac...    25   9.7  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   9.7  
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.7  

>SPBP16F5.05c |||ribosome biogenesis protein
           Nop8|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 146

 Score = 45.2 bits (102), Expect = 9e-06
 Identities = 24/69 (34%), Positives = 43/69 (62%)
 Frame = +3

Query: 441 LFQQDEDGDTQLHIASVHGCEKSVGTLIRVCPEKSWLDVPNDYGHTPLHLAVMSGNAIIT 620
           L ++DE+G++ LH+AS +G    V  +I     K  ++  N+ G+T +H A ++G+A I 
Sbjct: 29  LSRRDENGNSGLHMASANGHIAVVQKIIPYL-NKEVINAQNESGNTAMHWAALNGHAEIC 87

Query: 621 RMLVIAGAD 647
           ++L+ AG D
Sbjct: 88  KLLLEAGGD 96


>SPAC6C3.08 |||gankyrin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 234

 Score = 40.3 bits (90), Expect = 2e-04
 Identities = 26/70 (37%), Positives = 39/70 (55%)
 Frame = +3

Query: 438 LLFQQDEDGDTQLHIASVHGCEKSVGTLIRVCPEKSWLDVPNDYGHTPLHLAVMSGNAII 617
           L+ ++D  G T LH A+  G  + V  LI    +++ L+  + YG TPLH A+  G+  +
Sbjct: 133 LIRKKDLQGQTPLHRAAAVGKIQVVKYLIS---QRAPLNTSDSYGFTPLHFALAEGHPDV 189

Query: 618 TRMLVIAGAD 647
              LV AGAD
Sbjct: 190 GVELVRAGAD 199


>SPAC2F7.10 |||palmitoyltransferase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 642

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 22/67 (32%), Positives = 34/67 (50%)
 Frame = +3

Query: 450 QDEDGDTQLHIASVHGCEKSVGTLIRVCPEKSWLDVPNDYGHTPLHLAVMSGNAIITRML 629
           +D+ G   LH+A VH     +  ++ +      +D+ +D  HTPL  A   GN  IT  L
Sbjct: 97  KDKQGFNCLHLA-VHAASPLL--VVYLLHLDISVDLRDDQQHTPLMWASYHGNEPITNCL 153

Query: 630 VIAGADI 650
           +  GAD+
Sbjct: 154 LRWGADV 160



 Score = 25.8 bits (54), Expect = 5.6
 Identities = 18/64 (28%), Positives = 29/64 (45%)
 Frame = +3

Query: 450 QDEDGDTQLHIASVHGCEKSVGTLIRVCPEKSWLDVPNDYGHTPLHLAVMSGNAIITRML 629
           +D+   T L  AS HG E     L+R   +    D       TPLH +++ GN    +++
Sbjct: 130 RDDQQHTPLMWASYHGNEPITNCLLRWGADVLATDEDK---MTPLHWSIVGGNLKCMKLI 186

Query: 630 VIAG 641
           +  G
Sbjct: 187 LKEG 190


>SPAC22F3.09c |res2|mcs1, pct1|MBF transcription factor complex
           subunit Res2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 657

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 15/33 (45%), Positives = 21/33 (63%)
 Frame = +3

Query: 555 VPNDYGHTPLHLAVMSGNAIITRMLVIAGADIG 653
           V +D GHT LH A   G+  + ++L+ A ADIG
Sbjct: 243 VIDDDGHTSLHWACSMGHIEMIKLLLRANADIG 275


>SPCP1E11.10 |||ankyrin repeat protein, unknown biological
           role|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 207

 Score = 29.9 bits (64), Expect = 0.34
 Identities = 12/30 (40%), Positives = 21/30 (70%)
 Frame = +3

Query: 561 NDYGHTPLHLAVMSGNAIITRMLVIAGADI 650
           ++ G+TP+H AV  G++ + ++LV  G DI
Sbjct: 34  DENGYTPIHAAVSYGHSDLLKILVERGGDI 63


>SPBC725.16 |res1|sct1|MBF transcription factor complex subunit
           Res1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 637

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +3

Query: 570 GHTPLHLAVMSGNAIITRMLVIAGADI 650
           GHT LH A   GN  +   L+ AGA++
Sbjct: 237 GHTALHWAAAMGNLEMMHALLQAGANV 263



 Score = 27.1 bits (57), Expect = 2.4
 Identities = 15/44 (34%), Positives = 22/44 (50%)
 Frame = +3

Query: 450 QDEDGDTQLHIASVHGCEKSVGTLIRVCPEKSWLDVPNDYGHTP 581
           QD+ GDT L I + +G +K    L+      S   +PN+ G  P
Sbjct: 354 QDDHGDTALLICARNGAKKCARLLLSFYASSS---IPNNQGQYP 394


>SPAC1783.01 |||FAD binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 583

 Score = 26.6 bits (56), Expect = 3.2
 Identities = 12/31 (38%), Positives = 16/31 (51%)
 Frame = +1

Query: 397 RVLHRVPQTFLRCIYCSNRTRTETHNYTSPP 489
           R L+ +P+T L   Y SN +    H   SPP
Sbjct: 45  RRLYNLPRTLLNSRYYSNHSHGLVHGSKSPP 75


>SPAC589.11 |mug82||translation release factor |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 182

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 11/38 (28%), Positives = 20/38 (52%)
 Frame = -1

Query: 120 LFMNTEPCFDTKMSRNKQPHYNECACTMRD*DSMLEYL 7
           +F N   CF  K SR    + N+C  T  + + +L+++
Sbjct: 1   MFANFRNCFKIKNSRLIYDNINKCLLTKEETNQLLKFI 38


>SPBC27B12.13 |tom40|SPBC8D2.22|mitochondrial TOM complex subunit
           Tom40|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 344

 Score = 25.8 bits (54), Expect = 5.6
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 49  AFVVVRLFITRHFCVKTWFRV 111
           AF  VR  +T+ FC   WF V
Sbjct: 50  AFTGVRADVTKGFCTSPWFTV 70


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
 Frame = -1

Query: 183 FYTTVFNFNNNLIVSLLFILQLFMNTEPC-FDTKMSRNK 70
           F+T  F F+NN+++S +FI  + +N  P   D KM + K
Sbjct: 723 FFTLWFLFSNNVVLS-MFIAVIQVNFAPSESDLKMEQLK 760


>SPAC2F7.11 |nrd1|msa2|RNA-binding protein Nrd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 529

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = +1

Query: 211 IPKRNCARTSTLIPVLLLVKYQDRVIVMISIQG 309
           +P++NCA  S L P      +QD  +  ++I+G
Sbjct: 146 LPEKNCAFISFLDPSHATAFFQDAALKRLTIRG 178


>SPAC18G6.02c |chp1||chromodomain protein Chp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 960

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/41 (26%), Positives = 24/41 (58%)
 Frame = +3

Query: 318 YDEKNSEGESGVKSITDRLSQVMVSVQSPAQSTADIPPLYL 440
           ++ K+ +GE   +++TD+ S +  S     +++ D+ P YL
Sbjct: 155 FERKSMQGELKERNLTDKTSTLSTSF---GETSPDVNPFYL 192


>SPBC3B9.02c |cwf28||splicing factor Cwf28|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 381

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 15/58 (25%), Positives = 28/58 (48%)
 Frame = +3

Query: 204 KKDSETKLREDEYADSGFVTGEISGPCDSNDIDSGMIDYDEKNSEGESGVKSITDRLS 377
           KK++E   +  +  DSG   G       S+  D+ ++D+   NS  ++  K  T++ S
Sbjct: 74  KKETEVHEKPSQLPDSGLNYGLNIRVASSSAADNEIVDWKANNSNEKAQNKIATNKES 131


>SPCC1393.02c |||non-specific DNA binding protein Spt2
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 406

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 16/54 (29%), Positives = 25/54 (46%), Gaps = 1/54 (1%)
 Frame = +3

Query: 273 SGPCDSNDIDSGMIDYDEKNSEG-ESGVKSITDRLSQVMVSVQSPAQSTADIPP 431
           S P  +    SG++   +K S+   S  K + +  S+      S A STA +PP
Sbjct: 128 SAPAVNETSSSGLLQSKDKRSQSPHSPKKPVKNSSSRDQPVRNSGATSTASLPP 181


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 21/71 (29%), Positives = 33/71 (46%), Gaps = 1/71 (1%)
 Frame = +3

Query: 207 KDSETKLREDEYA-DSGFVTGEISGPCDSNDIDSGMIDYDEKNSEGESGVKSITDRLSQV 383
           +DS   L  DE   D   + G+ S   DS ++D         +S  +S  KS+ +  +  
Sbjct: 51  QDSALPLGIDENELDEIDINGD-SKKLDSVEVDESHDVNSPSDSRLKSSFKSVLELTANS 109

Query: 384 MVSVQSPAQST 416
           MVSV +P+  T
Sbjct: 110 MVSVLTPSTKT 120


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 25.0 bits (52), Expect = 9.7
 Identities = 9/24 (37%), Positives = 14/24 (58%)
 Frame = +3

Query: 564 DYGHTPLHLAVMSGNAIITRMLVI 635
           DY  TP+ LA+ SG   + +  V+
Sbjct: 86  DYSQTPIRLAIRSGKKSVHKSAVV 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,656,551
Number of Sequences: 5004
Number of extensions: 51837
Number of successful extensions: 169
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 159
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 168
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 301829700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)