Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6j07
         (564 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical pr...    29   3.1  
AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear recep...    29   3.1  
AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical...    28   4.0  
Z49887-5|CAE17773.1|  184|Caenorhabditis elegans Hypothetical pr...    28   5.3  
U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical p...    28   5.3  
U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical p...    28   5.3  
Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical pr...    27   7.0  
Z75712-11|CAB00044.2|  257|Caenorhabditis elegans Hypothetical p...    27   7.0  
Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical pr...    27   9.3  
Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical pr...    27   9.3  
AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.      27   9.3  

>Z82260-3|CAB05131.1|  346|Caenorhabditis elegans Hypothetical
           protein C32H11.4 protein.
          Length = 346

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 11/37 (29%), Positives = 20/37 (54%)
 Frame = +3

Query: 339 VGMAPRQMRVNRCIFASIVSFDACITYKSPCSPDAYH 449
           +GM P  + + + +FA+  S D    + SP  P+ Y+
Sbjct: 146 IGMQPHVLNITQDLFAADFSSDKVALFVSPADPNDYY 182


>Z70210-8|CAA94154.2|  414|Caenorhabditis elegans Hypothetical
           protein K08H2.8 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -2

Query: 269 SYSINFSQDLLYKILNSYIVPNYSLAQQYFDLYDENGFRTRI---PIQSACNNIISSVKK 99
           +Y + F +D L  + N+YIVP   +  +  D+ DEN  R  +   P+++  N ++  +  
Sbjct: 253 TYELGF-RDRLVLVNNNYIVPGVPINFKGSDVVDENQMRDIMFGEPMRALINELVLPIGS 311

Query: 98  TN 93
            N
Sbjct: 312 QN 313


>AY204169-1|AAO39173.1|  414|Caenorhabditis elegans nuclear receptor
           NHR-32 protein.
          Length = 414

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 17/62 (27%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
 Frame = -2

Query: 269 SYSINFSQDLLYKILNSYIVPNYSLAQQYFDLYDENGFRTRI---PIQSACNNIISSVKK 99
           +Y + F +D L  + N+YIVP   +  +  D+ DEN  R  +   P+++  N ++  +  
Sbjct: 253 TYELGF-RDRLVLVNNNYIVPGVPINFKGSDVVDENQMRDIMFGEPMRALINELVLPIGS 311

Query: 98  TN 93
            N
Sbjct: 312 QN 313


>AL031630-12|CAA20991.1|  375|Caenorhabditis elegans Hypothetical
           protein Y38H6C.13 protein.
          Length = 375

 Score = 28.3 bits (60), Expect = 4.0
 Identities = 9/25 (36%), Positives = 15/25 (60%)
 Frame = -2

Query: 134 SACNNIISSVKKTNSKHKKFVYWPK 60
           SAC+N    ++  N+  + F YWP+
Sbjct: 29  SACSNFFQFIRLNNNVMESFEYWPR 53


>Z49887-5|CAE17773.1|  184|Caenorhabditis elegans Hypothetical
           protein F09B9.5 protein.
          Length = 184

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 13/38 (34%), Positives = 20/38 (52%), Gaps = 4/38 (10%)
 Frame = -2

Query: 113 SSVKKTNSKHKKFVY----WPKDTNALVPLVWRESKEI 12
           S V+    +H+K+ Y    W   TN    ++WR +KEI
Sbjct: 76  SVVEHWYQEHEKYEYETPGWQTGTNYFTQVIWRSTKEI 113


>U39850-12|AAZ32806.1| 1336|Caenorhabditis elegans Hypothetical
            protein F52C9.1a protein.
          Length = 1336

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 146  IPIQSACNNIISSVKKTNSKHKKFVYWPKDTNALV 42
            + I  A N  I+++ +TNS H   V W  DT  LV
Sbjct: 1266 LAILDARNGKINALAQTNSTHTVSVNWLSDTRLLV 1300


>U39850-11|AAZ32807.1| 1331|Caenorhabditis elegans Hypothetical
            protein F52C9.1b protein.
          Length = 1331

 Score = 27.9 bits (59), Expect = 5.3
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = -2

Query: 146  IPIQSACNNIISSVKKTNSKHKKFVYWPKDTNALV 42
            + I  A N  I+++ +TNS H   V W  DT  LV
Sbjct: 1266 LAILDARNGKINALAQTNSTHTVSVNWLSDTRLLV 1300


>Z81493-3|CAB04036.1|  132|Caenorhabditis elegans Hypothetical
           protein F01D5.3 protein.
          Length = 132

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 2/47 (4%)
 Frame = +3

Query: 360 MRVNRCIFASIVSFDACITYKSPCSPDAYHD--DGWFICNSHLIKRF 494
           M +   I    VS  AC    +PC  D Y D  D   +CN+ + K F
Sbjct: 1   MLLQSSILLLSVSLAACQISTAPCQDDPYTDCRDYAALCNNPMYKNF 47


>Z75712-11|CAB00044.2|  257|Caenorhabditis elegans Hypothetical
           protein K04G2.7 protein.
          Length = 257

 Score = 27.5 bits (58), Expect = 7.0
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = -2

Query: 209 PNYSLAQQYFDLYDENG 159
           PNY     YF+L+D+NG
Sbjct: 227 PNYLFPHHYFNLFDQNG 243


>Z83220-4|CAC42264.1|  617|Caenorhabditis elegans Hypothetical
           protein C34B7.4 protein.
          Length = 617

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 8/13 (61%), Positives = 11/13 (84%)
 Frame = +1

Query: 481 SSNVLKCQKWFCP 519
           ++N+LK  KWFCP
Sbjct: 130 ATNILKLNKWFCP 142


>Z81523-4|CAB04243.1|  824|Caenorhabditis elegans Hypothetical
           protein F32H2.3 protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -2

Query: 185 YFDLYDENGFRTRIPIQSACNNIISSVKKTNSKHKKF---VYWPKDT 54
           Y DL+DEN FRT   + +A  +  SS ++      KF   V W ++T
Sbjct: 664 YIDLHDENNFRTSSSLSTA--STTSSFQRRILPGAKFFVHVVWGEET 708


>Z81516-7|CAB04207.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -2

Query: 257  NFSQDLLYKILNSYIVPNYSLAQQYF--DLYDENGFRTRIPIQSACNNIISSVKKTNSKH 84
            N  QDL   +L+   VP  SL Q++   + + ++G + +      CNN ++   K NS  
Sbjct: 1286 NLDQDLPNNMLHE--VPIKSLPQEWLWCETWCDDGSKEKAKTIDLCNNPLTKEPKLNSAK 1343

Query: 83   KKFVYW 66
            +    W
Sbjct: 1344 RIIKEW 1349


>Z81467-6|CAB03874.1| 1377|Caenorhabditis elegans Hypothetical protein
            F26H9.8 protein.
          Length = 1377

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
 Frame = -2

Query: 257  NFSQDLLYKILNSYIVPNYSLAQQYF--DLYDENGFRTRIPIQSACNNIISSVKKTNSKH 84
            N  QDL   +L+   VP  SL Q++   + + ++G + +      CNN ++   K NS  
Sbjct: 1286 NLDQDLPNNMLHE--VPIKSLPQEWLWCETWCDDGSKEKAKTIDLCNNPLTKEPKLNSAK 1343

Query: 83   KKFVYW 66
            +    W
Sbjct: 1344 RIIKEW 1349


>AY340594-1|AAQ17186.1|  824|Caenorhabditis elegans SPD-2 protein.
          Length = 824

 Score = 27.1 bits (57), Expect = 9.3
 Identities = 17/47 (36%), Positives = 25/47 (53%), Gaps = 3/47 (6%)
 Frame = -2

Query: 185 YFDLYDENGFRTRIPIQSACNNIISSVKKTNSKHKKF---VYWPKDT 54
           Y DL+DEN FRT   + +A  +  SS ++      KF   V W ++T
Sbjct: 664 YIDLHDENNFRTSSSLSTA--STTSSFQRRILPGAKFFVHVVWGEET 708


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,882,349
Number of Sequences: 27780
Number of extensions: 257399
Number of successful extensions: 710
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 694
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 710
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1166125180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)