Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6j06
         (661 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_01_0442 + 5770019-5771626,5773500-5773571,5774508-5774603,577...    32   0.35 
11_04_0436 + 17713591-17714301,17717587-17717820                       29   2.5  
05_01_0179 - 1240271-1241600,1241713-1241765                           29   2.5  
03_01_0193 + 1541884-1543064,1543153-1544647                           29   2.5  
08_02_0852 + 21877287-21877781                                         29   4.3  
11_03_0014 - 8965966-8965989,8966788-8966920,8967447-8967529,896...    28   5.7  
06_03_0733 + 23976835-23976906,23977076-23977279,23977388-239776...    28   7.6  

>04_01_0442 +
           5770019-5771626,5773500-5773571,5774508-5774603,
           5774739-5774885,5775429-5775560
          Length = 684

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 25/74 (33%), Positives = 37/74 (50%), Gaps = 1/74 (1%)
 Frame = -3

Query: 602 SARSSLFGDITAMSLFIPLVRSIPSSKATEHSRWLKTSLTASTASPSRRNSSTNIG-KLG 426
           S R S++      SLFIP+     SS  +  SR    ++T  + +  R  SS N G ++G
Sbjct: 301 SLRCSVYQPTQQQSLFIPVQPRASSSSTSSLSRPYVPAVTQFSQNLHRAPSSGNFGSRIG 360

Query: 425 INTSSTIFTSFLSN 384
           I  SS   T+ LS+
Sbjct: 361 IFPSSADTTNQLSS 374


>11_04_0436 + 17713591-17714301,17717587-17717820
          Length = 314

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 14/33 (42%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = -1

Query: 508 RAGSRLPLQRQQHHPAVGI-PPLISGSWVLIRL 413
           RA      +  +HHP VG+ PPL S +W+  RL
Sbjct: 86  RAAESRGEEADEHHPLVGVTPPLRSTTWMTPRL 118


>05_01_0179 - 1240271-1241600,1241713-1241765
          Length = 460

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 13/33 (39%), Positives = 23/33 (69%)
 Frame = +1

Query: 283 ERVLMIENPIDERXRLLDXLTKAKSDVSKLTAA 381
           E +L++ + + +  RLL+ LTKA +D+  +TAA
Sbjct: 114 EGLLVLRDKVTDAIRLLNPLTKAVTDLPPITAA 146


>03_01_0193 + 1541884-1543064,1543153-1544647
          Length = 891

 Score = 29.5 bits (63), Expect = 2.5
 Identities = 20/67 (29%), Positives = 32/67 (47%)
 Frame = -3

Query: 575 ITAMSLFIPLVRSIPSSKATEHSRWLKTSLTASTASPSRRNSSTNIGKLGINTSSTIFTS 396
           + AM++   + RS    +  E    L++  T   ASP R+ S+  IGKL + + S    S
Sbjct: 536 VCAMNIKAYMRRSKEEQEGKEEDEVLESESTPMLASPGRQGSNAIIGKLVLFSKS--LPS 593

Query: 395 FLSNWAA 375
              +W A
Sbjct: 594 RYEDWEA 600


>08_02_0852 + 21877287-21877781
          Length = 164

 Score = 28.7 bits (61), Expect = 4.3
 Identities = 21/57 (36%), Positives = 27/57 (47%)
 Frame = -3

Query: 620 ENESSFSARSSLFGDITAMSLFIPLVRSIPSSKATEHSRWLKTSLTASTASPSRRNS 450
           E  SS +  SSL G        +  VR + S  AT   RW+ +S+  S A P RR S
Sbjct: 5   ERRSSTTTTSSLLGSFRTA---VKKVRFLLSFSAT---RWILSSIVGSRAGPRRRVS 55


>11_03_0014 -
           8965966-8965989,8966788-8966920,8967447-8967529,
           8967690-8967986,8970067-8970165
          Length = 211

 Score = 28.3 bits (60), Expect = 5.7
 Identities = 20/70 (28%), Positives = 33/70 (47%), Gaps = 1/70 (1%)
 Frame = -3

Query: 638 RRPIQRENESSFSARSSLFGDITAMSLFIPLVRSIPSSKATEH-SRWLKTSLTASTASPS 462
           RR     N SS S RSS   D+   +    + R IP+ +  +H  R  KT +T+++ + +
Sbjct: 4   RRMSSSLNMSSSSLRSSGGADVDRRTTTATVPRRIPADQDKQHPKRETKTKITSNSKTKA 63

Query: 461 RRNSSTNIGK 432
              S    G+
Sbjct: 64  VSGSPPKAGE 73


>06_03_0733 +
           23976835-23976906,23977076-23977279,23977388-23977645,
           23978002-23978217,23978324-23978479,23978556-23978867,
           23978957-23979044,23979224-23979372,23979465-23979755
          Length = 581

 Score = 27.9 bits (59), Expect = 7.6
 Identities = 14/41 (34%), Positives = 24/41 (58%)
 Frame = +1

Query: 259 DEEMIDLLERVLMIENPIDERXRLLDXLTKAKSDVSKLTAA 381
           ++E +D+  R   ++   + R RLL  L  AKS++S+L  A
Sbjct: 45  EQECLDVYRR--KVDQASNSRARLLQQLANAKSELSRLLCA 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,314,255
Number of Sequences: 37544
Number of extensions: 361382
Number of successful extensions: 1008
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 984
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1008
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1655832080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)