Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6j06
         (661 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical pr...    31   0.96 
U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical pr...    31   0.96 
AC024089-2|AAK09072.2|   44|Caenorhabditis elegans Hypothetical ...    30   1.3  
AC006603-7|ABB51201.1|  576|Caenorhabditis elegans Hypothetical ...    30   1.3  
Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical pr...    29   2.9  
Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical p...    29   3.9  
Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical pr...    28   5.1  
AC024812-8|AAF59557.4|  912|Caenorhabditis elegans Hypothetical ...    28   5.1  
Z22174-1|CAA80128.1|  732|Caenorhabditis elegans Hypothetical pr...    28   6.8  

>U80846-3|AAC70890.1| 2232|Caenorhabditis elegans Hypothetical protein
            K06A9.1b protein.
          Length = 2232

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 24/77 (31%), Positives = 37/77 (48%), Gaps = 5/77 (6%)
 Frame = -3

Query: 602  SARSSLFGDITAMSL--FIPLVRSIPSSKATEHSRWLKTSLTASTASPS---RRNSSTNI 438
            S   S   D++++S     PL  S+PS+  +    +  TS  +S AS S    + SST  
Sbjct: 1364 STSGSTISDVSSVSTTSLAPLSSSLPSTVPSSTQSFSSTSEGSSKASSSPVPSQTSSTPT 1423

Query: 437  GKLGINTSSTIFTSFLS 387
               G   SST+ +S +S
Sbjct: 1424 NPTGSTESSTLLSSTIS 1440


>U00040-1|AAA50664.3| 1770|Caenorhabditis elegans Hypothetical
           protein C18H2.1 protein.
          Length = 1770

 Score = 30.7 bits (66), Expect = 0.96
 Identities = 28/99 (28%), Positives = 43/99 (43%), Gaps = 2/99 (2%)
 Frame = +1

Query: 253 PEDEEMIDLLERVLMIENPID--ERXRLLDXLTKAKSDVSKLTAAQLLRKDVKIVEDVLI 426
           P D  ++DL+     I N  D     +  D +T+  S    +T      K +++     +
Sbjct: 168 PCDTTLLDLVINFTTIANKADYPNSFKPTDVITQLNSSSENITECL---KHLELYNQS-V 223

Query: 427 PSFPILVEEFLRLGDAVDAVREVLSQRECSVALLLGMDL 543
            S     E FLRLG+  D   +  S RE +V+ L  MDL
Sbjct: 224 SSLTTDFEMFLRLGEGSDLFEKFRSIREEAVSFLSTMDL 262


>AC024089-2|AAK09072.2|   44|Caenorhabditis elegans Hypothetical
           protein C36E6.1a protein.
          Length = 44

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = -3

Query: 542 RSIPSSKATEHSRWLKTSLTASTASPSRRNSS 447
           R I   + T+ + W+KT  ++ + SPSR N+S
Sbjct: 12  RHINDQEKTQTTEWIKTDSSSKSPSPSRSNAS 43


>AC006603-7|ABB51201.1|  576|Caenorhabditis elegans Hypothetical
           protein B0524.7 protein.
          Length = 576

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 20/59 (33%), Positives = 32/59 (54%), Gaps = 4/59 (6%)
 Frame = +1

Query: 256 EDEEMIDLLERVLMIEN----PIDERXRLLDXLTKAKSDVSKLTAAQLLRKDVKIVEDV 420
           E EEMID+++R   IEN     +  R  L   L  + ++ S +    LLRK  K++E++
Sbjct: 275 ELEEMIDVIKREFSIENLMMRMLKNRHLLTMRLVVSGTNQSSIDRENLLRKTKKLLEEL 333


>Z54236-4|CAA90984.1| 1274|Caenorhabditis elegans Hypothetical
           protein C27B7.4 protein.
          Length = 1274

 Score = 29.1 bits (62), Expect = 2.9
 Identities = 19/49 (38%), Positives = 24/49 (48%)
 Frame = -1

Query: 643 DGDDPFNEKTNRAFRLDPHCSGTSPPCLSSFHLSDPFLAAKLLNTRAGS 497
           DG     EK     RLD   SG     L +   S+P L+  L++TRAGS
Sbjct: 822 DGPGQRWEKNRNYLRLDGTTSGADREKLINRFNSEPGLSLFLISTRAGS 870


>Z79603-10|CAI79233.1|  224|Caenorhabditis elegans Hypothetical
           protein M163.11 protein.
          Length = 224

 Score = 28.7 bits (61), Expect = 3.9
 Identities = 24/92 (26%), Positives = 43/92 (46%)
 Frame = -3

Query: 620 ENESSFSARSSLFGDITAMSLFIPLVRSIPSSKATEHSRWLKTSLTASTASPSRRNSSTN 441
           ++ SS S  S+     TA +       S  SS ++  S     + TA ++S +  +SST 
Sbjct: 44  DSSSSSSTASTSSSSSTAATSSDDSSSSSSSSSSSASSTSSSDTTTADSSSTTSSDSSTT 103

Query: 440 IGKLGINTSSTIFTSFLSNWAAVNFDTSLLAF 345
                 +TSS+  TS +S+ ++    T + +F
Sbjct: 104 SSNSSSSTSSSDSTSVVSSTSSSTTTTCVDSF 135


>Z69636-1|CAA93465.2| 1180|Caenorhabditis elegans Hypothetical protein
            F20B10.1 protein.
          Length = 1180

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 16/54 (29%), Positives = 27/54 (50%)
 Frame = -3

Query: 620  ENESSFSARSSLFGDITAMSLFIPLVRSIPSSKATEHSRWLKTSLTASTASPSR 459
            +N+    +++ + G I A+SLFI  + S+     +      KT+ T    SPSR
Sbjct: 1100 QNKQDLVSKAIIGGGILALSLFILCMSSLICYMRSRPEGVYKTNETGENCSPSR 1153


>AC024812-8|AAF59557.4|  912|Caenorhabditis elegans Hypothetical
           protein Y54E10BR.1 protein.
          Length = 912

 Score = 28.3 bits (60), Expect = 5.1
 Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
 Frame = -1

Query: 247 PY*ILSRNSPCLG*LLLKSLGQRQPSRNEYPKKKPQFH-FSTQKKGLH 107
           P  I S+ +P     ++ + G R  + N+YP K P  H    ++KG++
Sbjct: 35  PQFINSQEAPAKRIFIISADGLRYDTFNKYPDKSPYLHSIMNERKGIY 82


>Z22174-1|CAA80128.1|  732|Caenorhabditis elegans Hypothetical
           protein K01B6.1 protein.
          Length = 732

 Score = 27.9 bits (59), Expect = 6.8
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 2/89 (2%)
 Frame = +1

Query: 151 FLDTRSCSAAFGLSFSATIILDTVNFSKEFNKGTPEDEEMIDLLERVLM--IENPIDERX 324
           F D R C +  G S S        + S   +  TP  + +  +L  +L   I   +DE  
Sbjct: 559 FFDDRQCLSINGFSVS--------DISSILSTNTPSGQSVQSILVTILKDEINLDLDELF 610

Query: 325 RLLDXLTKAKSDVSKLTAAQLLRKDVKIV 411
            L+D L K ++D     A  L+  D K V
Sbjct: 611 GLIDVLEKIENDDVNSVAQDLMVLDDKTV 639


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,686,632
Number of Sequences: 27780
Number of extensions: 304020
Number of successful extensions: 963
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 916
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 963
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1476380920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)