Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6j06
         (661 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     27   0.21 
DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.    22   4.5  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              22   6.0  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   6.0  
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    21   7.9  

>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 26.6 bits (56), Expect = 0.21
 Identities = 16/57 (28%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
 Frame = +1

Query: 256 EDEEMIDLLERVLMIENPIDERXR-LLDXLTKAKSDVSKLTAAQLLRKDVKIVEDVL 423
           E  ++ ++ E VL     I E  R LLD   + KSD+++L  ++  +     +E++L
Sbjct: 134 EHSQLTNISEEVLKEAKIIQEEIRTLLDESIQRKSDITELDVSKRCKDLASFMENLL 190


>DQ011226-1|AAY63895.1|  471|Apis mellifera Rh-like protein protein.
          Length = 471

 Score = 22.2 bits (45), Expect = 4.5
 Identities = 5/13 (38%), Positives = 10/13 (76%)
 Frame = -2

Query: 570 RHVSLHSTCQIHS 532
           +H+ +H TC +H+
Sbjct: 321 KHLKIHDTCGVHN 333


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 7/24 (29%), Positives = 15/24 (62%)
 Frame = +3

Query: 366  EINGGPIAQERRENCRRRINTQLP 437
            ++  GP+++ERR++    +  Q P
Sbjct: 1062 KVGSGPMSEERRQHTAEGVPEQPP 1085


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
           protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 6.0
 Identities = 9/30 (30%), Positives = 19/30 (63%)
 Frame = +1

Query: 340 LTKAKSDVSKLTAAQLLRKDVKIVEDVLIP 429
           L   K   + ++AA+ + +++KIV + L+P
Sbjct: 842 LRSVKDRETIISAAEKIAEELKIVPEELVP 871


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 21.4 bits (43), Expect = 7.9
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -1

Query: 433 SWVLIRLRQFSRLS*AIGPPLISIRHFWPLS 341
           +W L  L +   L+  +GP  +S+R   PL+
Sbjct: 14  NWDLKNLTEAEYLAKVLGPKYLSMRMVIPLT 44


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,463
Number of Sequences: 438
Number of extensions: 3894
Number of successful extensions: 13
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 19855845
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)