Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6i21
         (268 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.15c |||ribonuclease H2 complex subunit|Schizosaccharom...    29   0.15 
SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|c...    28   0.25 
SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit...    25   2.4  
SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|...    25   2.4  
SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomy...    25   2.4  
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4...    25   2.4  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    23   5.5  
SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    23   7.2  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    23   7.2  
SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster ...    23   9.6  

>SPAC12B10.15c |||ribonuclease H2 complex
           subunit|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 147

 Score = 28.7 bits (61), Expect = 0.15
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 77  CHIWFDTPAPFFSRYHTQTQ 136
           CHI +D PAP F  +H + Q
Sbjct: 26  CHISYDGPAPVFEYFHDKIQ 45


>SPAC15A10.10 |mde6||Muskelin homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 716

 Score = 27.9 bits (59), Expect = 0.25
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +2

Query: 173 HIQKIQEPFIDKPPKLQNTLLLTARHSTH 259
           ++QK  +P  DK P   N L+L A   TH
Sbjct: 647 YLQKSMQPQFDKSPLFWNALILDAFSGTH 675


>SPBC2D10.06 |rep1|rec16|MBF transcription factor complex subunit
           Rep1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 472

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 12/32 (37%), Positives = 13/32 (40%)
 Frame = +2

Query: 116 RYHTQTQKLGLQTPPG*TSHIQKIQEPFIDKP 211
           +Y T T K  L TPP    HI      F   P
Sbjct: 382 QYDTSTSKAELSTPPSKRRHIDDADLVFHSSP 413


>SPBC1289.10c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 12/30 (40%), Positives = 15/30 (50%)
 Frame = +2

Query: 173 HIQKIQEPFIDKPPKLQNTLLLTARHSTHP 262
           H QK + P     P++QNT      H THP
Sbjct: 274 HQQK-KTPQSGSTPQMQNTTSQPTTHDTHP 302


>SPAPB24D3.02c |||amino acid permease, unknown 3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 543

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 249 CLAVNSSVFCNFGGLSMNGSWIFCMCEVYPGGV 151
           CLA +  +F       + GSWIF   ++ PGG+
Sbjct: 354 CLASSREIFAFARDKGLPGSWIF--RKLTPGGI 384


>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
           Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 684

 Score = 24.6 bits (51), Expect = 2.4
 Identities = 13/49 (26%), Positives = 22/49 (44%)
 Frame = +2

Query: 122 HTQTQKLGLQTPPG*TSHIQKIQEPFIDKPPKLQNTLLLTARHSTHPTV 268
           H     + ++   G   H+ KI  P + +PP   + L +     THPT+
Sbjct: 578 HLSAYAISIRMKDGQIRHLAKIISPCVLRPP---DDLNIIPVEDTHPTL 623


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 23.4 bits (48), Expect = 5.5
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -2

Query: 108 NGAGVSNHMWHRLKND 61
           N A V  H+W R +ND
Sbjct: 655 NSATVEKHIWERKEND 670


>SPBC16G5.06 |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 230

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/36 (27%), Positives = 20/36 (55%)
 Frame = +1

Query: 154 AARVDLAHTEDPGAVH*QAAEVTEHATINSQTFHTS 261
           +A  ++  +    ++H Q + VTE+ TI   T+ T+
Sbjct: 98  SASNEIISSSTNNSIHQQVSVVTEYVTIQPTTYVTT 133


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 23.0 bits (47), Expect = 7.2
 Identities = 10/24 (41%), Positives = 13/24 (54%)
 Frame = +2

Query: 44  GLSSPSSFFNRCHIWFDTPAPFFS 115
           G  +PSS    C ++ DTPA   S
Sbjct: 399 GYGTPSSAATLCPLYRDTPAAIVS 422


>SPBC16G5.16 |||transcription factor zf-fungal binuclear cluster
          type |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 827

 Score = 22.6 bits (46), Expect = 9.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = -2

Query: 78 HRLKNDDGDDKPCLNCVIY 22
          HR K      +PC NC+ Y
Sbjct: 20 HRRKIKCDQRRPCSNCIAY 38


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 998,009
Number of Sequences: 5004
Number of extensions: 17491
Number of successful extensions: 45
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 45
length of database: 2,362,478
effective HSP length: 61
effective length of database: 2,057,234
effective search space used: 55545318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)