Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6i20
         (583 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter Zhf1|Schizosacc...    26   3.5  
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy...    26   3.5  
SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr 3...    25   6.1  
SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|...    25   6.1  
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha...    25   8.1  

>SPAC23C11.14 |zhf1|zhf, zhf|zinc ion transporter
           Zhf1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 18/59 (30%), Positives = 27/59 (45%), Gaps = 3/59 (5%)
 Frame = +1

Query: 355 VNPNDSQHTCRVVELA---SNTAIADSAKVKSCAVCNKDNCNGAGSISFLSPTGHIRSD 522
           V P+   H C   +     ++T +ADSA   S  +    N NGAG+   ++  G I  D
Sbjct: 160 VLPSTIVHRCNTSQQEVSHTHTQVADSATESSPLLSYTGNHNGAGTSKPVNNHGSIEQD 218


>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 505

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = -2

Query: 255 VAQVERVEVNRILGVAFYWGFGALERVPAVLILFTVTLVALDGITC 118
           +  +  +  N IL +    GFG +E   + + +FTV    ++GI C
Sbjct: 150 ITPITSLSANIILNMLPVGGFGEIEYWLSSIKVFTVAAFIVNGILC 195


>SPCC24B10.02c |||NAD/NADH kinase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 449

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = -2

Query: 351 QASTDNSSALHDDLVTVSRSSRNAVQN 271
           ++ T NSSA+H + V  SR   N V N
Sbjct: 64  ESRTSNSSAMHIENVVASRLMYNEVAN 90


>SPBC1683.13c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 618

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 21/78 (26%), Positives = 33/78 (42%), Gaps = 4/78 (5%)
 Frame = +1

Query: 244 YLRNILPVEVLNSVTGAPRYC----HKIVMKSGTVVRTCLDVNPNDSQHTCRVVELASNT 411
           Y  + LP+  ++  T A R      ++ + + G V    L++  N       V  LAS  
Sbjct: 509 YDADCLPMTFIHIATSAARIILVKLNENIPEDGDVCNIYLEIITNALDVCANVWPLASQA 568

Query: 412 AIADSAKVKSCAVCNKDN 465
           + A     KSCA   K+N
Sbjct: 569 SRAILNAYKSCATSPKEN 586


>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 4196

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/37 (32%), Positives = 21/37 (56%)
 Frame = +1

Query: 196  PPVECNTQDSINFNTLYLRNILPVEVLNSVTGAPRYC 306
            PPV    +DSI    + L++++ + +L+  T A R C
Sbjct: 981  PPVYRKKEDSIYLLDMCLQSVVNIPLLSIKTTAQRNC 1017


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,379,368
Number of Sequences: 5004
Number of extensions: 46898
Number of successful extensions: 126
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 126
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)