Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= bmnc6i20
(583 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_05_0371 + 28364896-28366182,28366510-28366623,28366861-283671... 35 0.054
12_02_0741 - 22690452-22690528,22690693-22690813,22690871-226909... 30 1.2
01_05_0397 + 21753095-21753814 29 2.0
03_01_0558 + 4155220-4155642,4156292-4156348,4157030-4157165,415... 28 4.7
11_01_0438 - 3349506-3351239 28 6.2
02_05_1338 + 35790726-35791862 28 6.2
01_05_0711 - 24495399-24495595,24495733-24495826,24495906-244959... 28 6.2
01_01_0623 + 4672581-4673413,4674274-4674389,4674694-4674902,467... 28 6.2
08_02_1417 - 26922775-26922986,26923102-26923291,26923816-269239... 27 8.2
07_03_1382 - 26170563-26170631,26171151-26171843 27 8.2
05_07_0177 + 28171863-28171980,28173003-28173082,28173173-281732... 27 8.2
05_07_0171 - 28131533-28131654,28131815-28131908,28132006-281320... 27 8.2
01_06_0105 + 26507988-26508105,26509398-26509477,26509673-265097... 27 8.2
>02_05_0371 +
28364896-28366182,28366510-28366623,28366861-28367125,
28367981-28368105
Length = 596
Score = 34.7 bits (76), Expect = 0.054
Identities = 21/77 (27%), Positives = 40/77 (51%), Gaps = 1/77 (1%)
Frame = -2
Query: 432 LRAVSDRGVGGELDNSAGVLGIVGV-DIQASTDNSSALHDDLVTVSRSSRNAVQNFHRQN 256
+R + D GVG E++ G I+G+ +Q STD+S+++ +++ + R + Q
Sbjct: 390 MRRMEDVGVGLEIETRPGGCAIIGLKPLQLSTDHSTSIEEEVHRIKREHPDDDQCIVNDR 449
Query: 255 VAQVERVEVNRILGVAF 205
V R++V R G +
Sbjct: 450 VK--GRLKVTRAFGAGY 464
>12_02_0741 -
22690452-22690528,22690693-22690813,22690871-22690951,
22691048-22691096,22691324-22691409,22691494-22691571,
22691647-22691796,22691884-22691922,22692194-22692283,
22692568-22692630,22692722-22692791,22693109-22693155,
22693268-22693330,22693411-22693461,22693702-22693785,
22693932-22693996,22694322-22694378,22694452-22694569,
22694664-22694714,22694789-22694875,22694956-22695035,
22695962-22696127
Length = 590
Score = 30.3 bits (65), Expect = 1.2
Identities = 17/29 (58%), Positives = 18/29 (62%)
Frame = -2
Query: 537 TKYVAIRANVASGREKGNRSSSVTVVLVA 451
TKYV I V SG KG +SSV VVL A
Sbjct: 17 TKYVLITGGVVSGLGKGVTASSVGVVLKA 45
>01_05_0397 + 21753095-21753814
Length = 239
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/37 (32%), Positives = 22/37 (59%)
Frame = +1
Query: 349 LDVNPNDSQHTCRVVELASNTAIADSAKVKSCAVCNK 459
+D N + ++H +++ +TA +DS V SC VC +
Sbjct: 8 VDTNWSAAEHDHIAIDIGDSTAGSDSDDVPSCVVCTE 44
>03_01_0558 +
4155220-4155642,4156292-4156348,4157030-4157165,
4158378-4158514,4159509-4159632,4160111-4160568
Length = 444
Score = 28.3 bits (60), Expect = 4.7
Identities = 23/79 (29%), Positives = 31/79 (39%), Gaps = 2/79 (2%)
Frame = +1
Query: 292 APRYCHKIVMKSGTVVRTCLDVNPNDSQHTCRVVE-LASNTAIADSAKVKSCA-VCNKDN 465
A +Y K K+ + C+ +NP H VVE L A+ D V + V D+
Sbjct: 352 AGQYPAKAAQKAAALAHRCVSLNPKSRPHMSAVVEALEPLLALDDDCLVGTFVYVAPPDD 411
Query: 466 CNGAGSISFLSPTGHIRSD 522
G S G RSD
Sbjct: 412 VAANGDGSSKRRAGRRRSD 430
>11_01_0438 - 3349506-3351239
Length = 577
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/48 (29%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +1
Query: 289 GAPRYCHKIVMKSGTVV---RTCLDVNPNDSQHTCRVVELASNTAIAD 423
GAPR +++ +++GT RTC + P D+ + E+ A+ D
Sbjct: 308 GAPRGAYRLALRNGTFAPADRTCGRIAPTDANPVWAMEEMPLPRAMGD 355
>02_05_1338 + 35790726-35791862
Length = 378
Score = 27.9 bits (59), Expect = 6.2
Identities = 14/28 (50%), Positives = 15/28 (53%), Gaps = 1/28 (3%)
Frame = -2
Query: 330 SALH-DDLVTVSRSSRNAVQNFHRQNVA 250
S LH DDLV S AV FH N+A
Sbjct: 176 SLLHQDDLVLAGLESEKAVSGFHADNIA 203
>01_05_0711 -
24495399-24495595,24495733-24495826,24495906-24495986,
24496130-24496178,24496281-24496366,24496452-24496679,
24496797-24496835,24496911-24497000,24497093-24497155,
24497233-24497302,24497400-24497446,24497544-24497606,
24497702-24497752,24497851-24497934,24498075-24498139,
24498243-24498299,24498409-24498526,24498624-24498674,
24499100-24499186,24499272-24499351,24500663-24500780
Length = 605
Score = 27.9 bits (59), Expect = 6.2
Identities = 16/38 (42%), Positives = 22/38 (57%)
Frame = -2
Query: 534 KYVAIRANVASGREKGNRSSSVTVVLVAHSAGLDLRAV 421
KYV + V SG KG +SS+ VVL S GL + ++
Sbjct: 2 KYVLVTGGVVSGLGKGVTASSIGVVL--KSCGLRITSI 37
>01_01_0623 +
4672581-4673413,4674274-4674389,4674694-4674902,
4675953-4676072,4676185-4676313,4676394-4676442,
4676899-4676970,4677574-4677707,4677798-4677915,
4678332-4678541,4678630-4678942,4679539-4679632,
4679854-4679962,4680243-4680514,4680597-4680724,
4680832-4681066,4681570-4681758,4681845-4682128,
4682218-4682398,4682486-4682728,4682904-4682986,
4683119-4683227,4687996-4688091,4688675-4688764,
4688881-4689129,4689233-4689412,4690179-4690250,
4691385-4691474,4691605-4691705,4691794-4691959
Length = 1757
Score = 27.9 bits (59), Expect = 6.2
Identities = 24/85 (28%), Positives = 39/85 (45%), Gaps = 9/85 (10%)
Frame = +1
Query: 124 YSIKCYQCNSEQDK--NCGD---PFKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVT 288
YS + C S + NC D P + PP +CN S++F TL + + +++ V
Sbjct: 510 YSSHLFLCASIRAPKLNCDDDICPVEIIHPPEDCNLNSSLSF-TLQVCRVEDIDIWGLVQ 568
Query: 289 GAPRYCHKI----VMKSGTVVRTCL 351
G + ++ V SGT+ T L
Sbjct: 569 GTVIHFNRARSVSVHTSGTISATGL 593
>08_02_1417 -
26922775-26922986,26923102-26923291,26923816-26923928,
26924032-26924112,26925329-26926661
Length = 642
Score = 27.5 bits (58), Expect = 8.2
Identities = 10/34 (29%), Positives = 22/34 (64%)
Frame = -1
Query: 169 SSYPVHCYIGST*WNNLFRIALVEQRRRMLHFLP 68
+ + ++CYIGS+ + + +VE+ RR+ + +P
Sbjct: 137 NGFEINCYIGSSLVSMYAKCGMVEEARRVFNRMP 170
>07_03_1382 - 26170563-26170631,26171151-26171843
Length = 253
Score = 27.5 bits (58), Expect = 8.2
Identities = 11/30 (36%), Positives = 17/30 (56%)
Frame = +1
Query: 364 NDSQHTCRVVELASNTAIADSAKVKSCAVC 453
ND H V+++ + A A + +SCAVC
Sbjct: 42 NDDDHHSHVIDIDAAAAAAAAGGRRSCAVC 71
>05_07_0177 +
28171863-28171980,28173003-28173082,28173173-28173259,
28173796-28173913,28174070-28174126,28174217-28174281,
28174390-28174473,28174599-28174649,28174734-28174796,
28174889-28174935,28175024-28175093,28175363-28175425,
28175523-28175612,28175700-28175738,28175820-28176047,
28176348-28176433,28176515-28176563,28176972-28177052,
28177143-28177236,28177396-28177598
Length = 590
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 534 KYVAIRANVASGREKGNRSSSVTVVLVA 451
KYV + V SG KG +SS+ VVL A
Sbjct: 2 KYVVVMGGVISGLGKGVTASSIGVVLKA 29
>05_07_0171 -
28131533-28131654,28131815-28131908,28132006-28132086,
28132199-28132247,28132333-28132418,28132660-28132887,
28132969-28133007,28133281-28133343,28133643-28133712,
28133802-28133848,28133925-28133987,28134075-28134125,
28134421-28134485,28134573-28134629,28134779-28134896,
28135494-28135580,28135672-28135751,28136364-28136481
Length = 505
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 534 KYVAIRANVASGREKGNRSSSVTVVLVA 451
KYV + V SG KG +SS+ VVL A
Sbjct: 2 KYVVVMGGVISGLGKGVTASSIGVVLKA 29
>01_06_0105 +
26507988-26508105,26509398-26509477,26509673-26509759,
26510446-26510496,26510581-26510698,26510820-26510924,
26511015-26511079,26511554-26511637,26511741-26511791,
26511874-26511936,26512016-26512062,26512155-26512233,
26512365-26512427,26512761-26512850,26512932-26513168,
26513372-26513457,26513664-26513685,26513686-26513766,
26513859-26513952,26514388-26514566
Length = 599
Score = 27.5 bits (58), Expect = 8.2
Identities = 14/28 (50%), Positives = 17/28 (60%)
Frame = -2
Query: 534 KYVAIRANVASGREKGNRSSSVTVVLVA 451
KYV + V SG KG +SS+ VVL A
Sbjct: 2 KYVLVTGGVVSGLGKGVTASSIGVVLKA 29
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,608,356
Number of Sequences: 37544
Number of extensions: 319577
Number of successful extensions: 858
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 843
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 858
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1364465340
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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