Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6i20
         (583 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024881-5|AAK71415.1|  668|Caenorhabditis elegans Na/ca exchang...    31   0.45 
AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm rece...    30   1.4  
Z35640-5|CAO82046.1|  689|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z35640-4|CAA84704.1|  707|Caenorhabditis elegans Hypothetical pr...    29   2.4  
Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical pr...    29   3.2  
U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astaci...    28   5.6  
AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical ...    28   5.6  
Z81113-8|CAO82064.1|  138|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.      27   7.4  
AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog ...    27   7.4  
AF016427-6|AAY86198.1|  177|Caenorhabditis elegans Hypothetical ...    27   7.4  

>AC024881-5|AAK71415.1|  668|Caenorhabditis elegans Na/ca exchangers
           protein 10 protein.
          Length = 668

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 18/45 (40%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
 Frame = +1

Query: 451 CNKDNCNGAGSISFLS--PTGHIRSDRYVFRFXTIISILYIFFTF 579
           CNKD C G G + +       H RS R +     IISI+Y+ F F
Sbjct: 74  CNKDACEGGGYLQWSEYIKCEHSRSIRIIL---IIISIIYLLFLF 115


>AF016685-7|AAG24151.1|  341|Caenorhabditis elegans Seven tm
           receptor protein 86 protein.
          Length = 341

 Score = 29.9 bits (64), Expect = 1.4
 Identities = 12/27 (44%), Positives = 16/27 (59%)
 Frame = +1

Query: 340 RTCLDVNPNDSQHTCRVVELASNTAIA 420
           R C+ +N ND Q +CR V+L     IA
Sbjct: 221 RCCVKLNKNDKQTSCRTVDLQKQLMIA 247


>Z35640-5|CAO82046.1|  689|Caenorhabditis elegans Hypothetical
           protein F43D9.3b protein.
          Length = 689

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -2

Query: 387 SAGVLGIVGVDIQASTD---NSSALHDDLVTVSRSSRNAVQNFHRQNVAQVERVEVNRIL 217
           SA V G     +Q   D   N  +L DDL  + R S N+  ++H  N      V VN +L
Sbjct: 153 SAAVHGGAVSQVQKVVDQYLNFISLEDDLFVLRRYSENSTFSYHAMNSPGTSDVAVNAML 212


>Z35640-4|CAA84704.1|  707|Caenorhabditis elegans Hypothetical
           protein F43D9.3a protein.
          Length = 707

 Score = 29.1 bits (62), Expect = 2.4
 Identities = 20/60 (33%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = -2

Query: 387 SAGVLGIVGVDIQASTD---NSSALHDDLVTVSRSSRNAVQNFHRQNVAQVERVEVNRIL 217
           SA V G     +Q   D   N  +L DDL  + R S N+  ++H  N      V VN +L
Sbjct: 153 SAAVHGGAVSQVQKVVDQYLNFISLEDDLFVLRRYSENSTFSYHAMNSPGTSDVAVNAML 212


>Z78543-1|CAB01753.2| 1170|Caenorhabditis elegans Hypothetical protein
            F29G6.1 protein.
          Length = 1170

 Score = 28.7 bits (61), Expect = 3.2
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = -1

Query: 523  DQSECGQWERERK*IQLRYSCPCCTQ 446
            DQ+ C Q ++ +K IQ+ Y   CC Q
Sbjct: 947  DQNACIQMKKNKKTIQVSYQGQCCNQ 972


>U39666-1|AAA80412.2|  644|Caenorhabditis elegans Nematode astacin
           protease protein33 protein.
          Length = 644

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 4/78 (5%)
 Frame = +1

Query: 118 TGYSIKCYQCNSEQDKNCGDP---FKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVT 288
           T  S  C  C ++  + C       +SAK    CNTQ      T   R++L  ++ + V 
Sbjct: 557 TRCSENCGSCGTQYRERCTSTTNCLRSAKQTRVCNTQPCAQGTTRGKRSVLQTQISHRVK 616

Query: 289 GAPRY-CHKIVMKSGTVV 339
               + C + V+  G  V
Sbjct: 617 RLNGWCCARFVLSRGVCV 634


>AF125461-4|AAK18995.1| 1360|Caenorhabditis elegans Hypothetical
            protein Y8A9A.2 protein.
          Length = 1360

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = -1

Query: 511  CGQWERERK*IQLRYSCPC 455
            CGQ  R+RK + L+Y C C
Sbjct: 1123 CGQETRKRKCLSLQYGCAC 1141


>Z81113-8|CAO82064.1|  138|Caenorhabditis elegans Hypothetical
           protein T03F6.9 protein.
          Length = 138

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 9/13 (69%), Positives = 10/13 (76%)
 Frame = +1

Query: 451 CNKDNCNGAGSIS 489
           C KD CNGAG +S
Sbjct: 107 CGKDKCNGAGKVS 119


>Z73896-2|CAA98059.2| 1369|Caenorhabditis elegans Hypothetical
           protein F09E8.3 protein.
          Length = 1369

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +1

Query: 178 PFKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVT-GAPRYCHKIVMK-SGTVVRTCL 351
           P KS K     N  + I+FNT+   +ILP E  N  T G  R  ++++ K   TV + CL
Sbjct: 265 PIKSIKTFTLGNLVE-IDFNTIQALDILPKETENKKTFGQGRSLYQLMDKCRSTVGKKCL 323


>AF271389-1|AAF76200.1| 1369|Caenorhabditis elegans MSH-5 protein.
          Length = 1369

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +1

Query: 178 PFKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVT-GAPRYCHKIVMK-SGTVVRTCL 351
           P KS K     N  + I+FNT+   +ILP E  N  T G  R  ++++ K   TV + CL
Sbjct: 265 PIKSIKTFTLGNLVE-IDFNTIQALDILPKETENKKTFGQGRSLYQLMDKCRSTVGKKCL 323


>AF070070-1|AAC70065.1|  933|Caenorhabditis elegans MutS homolog
           protein.
          Length = 933

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 2/60 (3%)
 Frame = +1

Query: 178 PFKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVT-GAPRYCHKIVMK-SGTVVRTCL 351
           P KS K     N  + I+FNT+   +ILP E  N  T G  R  ++++ K   TV + CL
Sbjct: 265 PIKSIKTFTLGNLVE-IDFNTIQALDILPKETENKKTFGQGRSLYQLMDKCRSTVGKKCL 323


>AF016427-6|AAY86198.1|  177|Caenorhabditis elegans Hypothetical
           protein F32D1.11 protein.
          Length = 177

 Score = 27.5 bits (58), Expect = 7.4
 Identities = 24/119 (20%), Positives = 42/119 (35%)
 Frame = +1

Query: 115 ETGYSIKCYQCNSEQDKNCGDPFKSAKPPVECNTQDSINFNTLYLRNILPVEVLNSVTGA 294
           + G++ +CY CN E  KN   P    K    C    S +   +Y      V    +    
Sbjct: 13  QLGHAFECYTCNEELTKN--GPCIDRK--TICENSTSCSMAVMYHAGRSIVRKFCTPPST 68

Query: 295 PRYCHKIVMKSGTVVRTCLDVNPNDSQHTCRVVELASNTAIADSAKVKSCAVCNKDNCN 471
           P Y + ++M   ++   C +++  D     R     +    +   +     VC    CN
Sbjct: 69  PIYQYLMMMPGASM---CQNIDLTDLVPPVRQRRHVTGPPASPGEQASLLCVCTTPMCN 124


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,466,542
Number of Sequences: 27780
Number of extensions: 283723
Number of successful extensions: 830
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 830
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)