Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6i20
         (583 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    23   2.9  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    23   2.9  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    23   2.9  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    23   2.9  
AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropi...    22   3.8  
DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex det...    21   8.9  
DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex det...    21   8.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    21   8.9  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 476 LDLFPFSLPLATFAL 520
           L++FPF  PL +FA+
Sbjct: 190 LNIFPFDDPLCSFAI 204


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 476 LDLFPFSLPLATFAL 520
           L++FPF  PL +FA+
Sbjct: 190 LNIFPFDDPLCSFAI 204


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 476 LDLFPFSLPLATFAL 520
           L++FPF  PL +FA+
Sbjct: 241 LNIFPFDDPLCSFAI 255


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 22.6 bits (46), Expect = 2.9
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 476 LDLFPFSLPLATFAL 520
           L++FPF  PL +FA+
Sbjct: 190 LNIFPFDDPLCSFAI 204


>AJ780964-1|CAG62942.2|  332|Apis mellifera putative corticotropin
          releasing hormone-binding protein protein.
          Length = 332

 Score = 22.2 bits (45), Expect = 3.8
 Identities = 8/24 (33%), Positives = 14/24 (58%)
 Frame = -2

Query: 90 GECYTFCHVYFIIIFQRSYTGVLR 19
          G  Y F  ++FII F  + +G ++
Sbjct: 5  GSLYCFARLFFIIGFFNAISGAIK 28


>DQ325089-1|ABD14103.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 211 NTQDSINFNTLYLRNILPVEVLNSVTGAPRYC 306
           N  ++ N+N     NI+ +E +      P YC
Sbjct: 101 NNYNNNNYNKKLYYNIINIEQIPVPVPVPVYC 132


>DQ325088-1|ABD14102.1|  185|Apis mellifera complementary sex
           determiner protein.
          Length = 185

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/32 (28%), Positives = 15/32 (46%)
 Frame = +1

Query: 211 NTQDSINFNTLYLRNILPVEVLNSVTGAPRYC 306
           N  ++ N+N     NI+ +E +      P YC
Sbjct: 101 NNYNNNNYNKKLYYNIINIEQIPVPVPVPVYC 132


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 21.0 bits (42), Expect = 8.9
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -3

Query: 149 LHW*HLME*PVSNSASRTAK 90
           L W  L E P+S+S S T +
Sbjct: 343 LPWLELQEKPISDSTSTTTE 362


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 165,063
Number of Sequences: 438
Number of extensions: 3677
Number of successful extensions: 9
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 16870914
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)