Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6i13
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin homolog|Sc...    31   0.18 
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    27   3.0  
SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces p...    25   9.0  

>SPCC962.02c |bir1|cut17, pbh1, SPCP31B10.10c|survivin
           homolog|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 997

 Score = 30.7 bits (66), Expect = 0.18
 Identities = 16/53 (30%), Positives = 23/53 (43%), Gaps = 8/53 (15%)
 Frame = +3

Query: 495 SLIVNGFKYNQVD--------DHVVCEYCEAQIKNWSEDECIXYAHVTLSPYC 629
           +L   GF YN +         D+V C  C     +W +D+     H+T SP C
Sbjct: 43  TLATVGFYYNPISESNSEERLDNVTCYMCTKSFYDWEDDDDPLKEHITHSPSC 95



 Score = 25.4 bits (53), Expect = 6.8
 Identities = 10/34 (29%), Positives = 16/34 (47%), Gaps = 3/34 (8%)
 Frame = +3

Query: 498 LIVNGFKYN---QVDDHVVCEYCEAQIKNWSEDE 590
           +  +GF YN      D   C YC+  + +W  D+
Sbjct: 144 MAASGFVYNPTADAKDAAHCLYCDINLHDWEPDD 177


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 14  DDLLKNISFSHSKCAPFKLQNYXVLKRLSNGFIDKSVDV 130
           +D+L +I     K  PF L+    ++ L+ G IDK + +
Sbjct: 267 EDVLNDIELKIYKIRPFNLEKCINMRDLNPGDIDKLISI 305


>SPBC31E1.05 |gle1||RNA export factor Gle1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 480

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/53 (24%), Positives = 28/53 (52%)
 Frame = -1

Query: 183 LVSRFILKLNFCNSLIEPTSTDLSINPLLNRFKTX*FCSLKGAHLE*LKEIFF 25
           LV +++L   FC S+++    ++++NP ++ +     C L       LK++ F
Sbjct: 268 LVYKWVLNF-FCKSVVKQAEAEVAVNP-ISAYPLAKVCLLLQTQNADLKDLLF 318


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,427,621
Number of Sequences: 5004
Number of extensions: 46310
Number of successful extensions: 154
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 154
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)