Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= bmnc6i10
         (678 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr 3|...    27   3.3  
SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual        25   7.6  
SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11 |Schizosacc...    25   7.6  

>SPCC1919.12c |||aminopeptidase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 843

 Score = 26.6 bits (56), Expect = 3.3
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 2/72 (2%)
 Frame = -2

Query: 524 FVVGGGFP--LANTFFIVFIMPGMSDMCLSTHFTAHFSKSIVHLSIVS*LGSGPNLSLAV 351
           F+    FP  L     +  I+P  S     + F++   K ++ +  +S + SGP +  A+
Sbjct: 573 FIFNVPFPVFLCYDILVETILPAGSQTLTDSVFSSKLYKLVIFVVFLSLVNSGPFIFRAL 632

Query: 350 SLQSITHLCSLF 315
           S +S+  L  L+
Sbjct: 633 SKKSLAVLTMLW 644


>SPCC550.14 |||vigilin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1279

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +3

Query: 474  EDNEESVGKWKTTTHD 521
            ED+E+ V  WK  THD
Sbjct: 1157 EDHEDGVFPWKLVTHD 1172


>SPBC646.02 |cwf11||complexed with Cdc5 protein Cwf11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1284

 Score = 25.4 bits (53), Expect = 7.6
 Identities = 11/33 (33%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
 Frame = +1

Query: 268 LNHAN-NYVQNEINHFQNRLQRCVMDCNDTARD 363
           +N+AN N+ QNE   FQ  + +C+++    ++D
Sbjct: 12  INYANSNWGQNEGVEFQETMLQCILEAVIVSKD 44


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,782,437
Number of Sequences: 5004
Number of extensions: 55849
Number of successful extensions: 133
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 130
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 133
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 311890690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)